Wall clock time and date at job start Mon Mar 30 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00065 * 2 1 4 4 H 1.48505 * 109.46828 * 239.99682 * 3 2 1 5 5 H 1.48494 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46854 * 120.00259 * 3 2 1 7 7 C 1.38799 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00185 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99753 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99964 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46789 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00356 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99432 * 180.02562 * 11 10 9 14 14 C 1.47155 * 120.98543 * 354.81513 * 13 11 10 15 15 C 1.53293 * 108.38322 * 129.47991 * 14 13 11 16 16 O 1.42964 * 109.22482 * 52.30447 * 15 14 13 17 17 C 1.42966 * 114.16613 * 297.42196 * 16 15 14 18 18 C 1.47169 * 120.94152 * 174.80093 * 13 11 10 19 19 H 1.09000 * 109.64964 * 110.77551 * 18 13 11 20 20 C 1.53003 * 109.72824 * 350.21692 * 18 13 11 21 21 C 1.53007 * 117.49534 * 265.71135 * 20 18 13 22 22 C 1.53001 * 117.49945 * 197.08756 * 20 18 13 23 23 H 0.97004 * 119.99836 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46658 * 59.99883 * 10 9 7 25 25 H 1.08998 * 109.46648 * 299.99729 * 10 9 7 26 26 H 1.09002 * 109.67617 * 9.75987 * 14 13 11 27 27 H 1.08998 * 109.71215 * 249.22371 * 14 13 11 28 28 H 1.09003 * 109.51483 * 292.38042 * 15 14 13 29 29 H 1.08998 * 109.51291 * 172.22785 * 15 14 13 30 30 H 1.09003 * 109.51225 * 182.50350 * 17 16 15 31 31 H 1.09000 * 109.51015 * 302.60303 * 17 16 15 32 32 H 1.08997 * 115.55297 * 51.41328 * 20 18 13 33 33 H 1.09001 * 117.49895 * 359.97438 * 21 20 18 34 34 H 1.08994 * 117.49619 * 145.02209 * 21 20 18 35 35 H 1.08996 * 117.49822 * 214.97536 * 22 20 18 36 36 H 1.08999 * 117.49699 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0018 14 6 4.2954 -6.1293 -0.1121 15 6 4.9885 -6.9075 1.0122 16 8 4.5431 -8.2658 0.9884 17 6 3.1431 -8.4269 1.2292 18 6 2.3546 -7.7263 0.1168 19 1 2.5082 -8.2491 -0.8272 20 6 0.8651 -7.7198 0.4666 21 6 0.4864 -7.8182 1.9458 22 6 0.2632 -9.0139 1.0177 23 1 -0.4850 0.8401 -0.0004 24 1 3.1243 -3.7314 0.8905 25 1 3.1243 -3.7314 -0.8895 26 1 4.5186 -5.0668 -0.0148 27 1 4.6456 -6.4909 -1.0789 28 1 4.7379 -6.4590 1.9735 29 1 6.0680 -6.8757 0.8651 30 1 2.8951 -9.4883 1.2382 31 1 2.8860 -7.9848 2.1917 32 1 0.2342 -7.1045 -0.1749 33 1 1.2984 -7.8880 2.6696 34 1 -0.3937 -7.2675 2.2776 35 1 -0.7638 -9.2499 0.7390 36 1 0.9284 -9.8699 1.1314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133461803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:06 Heat of formation + Delta-G solvation = -26.967843 kcal Electronic energy + Delta-G solvation = -19146.016683 eV Core-core repulsion = 16144.607315 eV Total energy + Delta-G solvation = -3001.409368 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65872 -38.13587 -36.97760 -34.59454 -32.45719 -31.12937 -29.54043 -27.25185 -25.54743 -24.88461 -22.73055 -22.11534 -20.82211 -19.01803 -17.66413 -16.89028 -16.69397 -15.79188 -15.56270 -15.37404 -15.17040 -14.82809 -14.45070 -14.04130 -13.73262 -13.43584 -13.27447 -12.57109 -12.16382 -12.04368 -11.82115 -11.52053 -11.31893 -11.06128 -11.04115 -10.95752 -10.79009 -10.48486 -10.15602 -10.03659 -9.83697 -9.08536 -8.54558 -8.43689 -8.26850 -6.53171 -6.24313 -3.95172 2.76141 2.99503 3.21437 3.21795 3.26881 3.50492 3.58764 4.04442 4.17678 4.51922 4.60030 4.80760 4.88717 4.91022 5.05561 5.11033 5.11290 5.14628 5.17864 5.32272 5.48102 5.56368 5.64209 5.68820 5.72247 5.79691 5.86908 6.04817 6.06203 6.24153 6.37569 6.81127 6.88448 7.50614 7.56481 8.31991 8.56183 9.20974 10.83034 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.004851 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.047254 B = 5770.299130 C = 6532.234523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.541 3.459 12 O -0.501 6.501 13 N -0.620 5.620 14 C 0.074 3.926 15 C 0.046 3.954 16 O -0.381 6.381 17 C 0.044 3.956 18 C 0.147 3.853 19 H 0.081 0.919 20 C -0.154 4.154 21 C -0.176 4.176 22 C -0.193 4.193 23 H 0.269 0.731 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -15.900 1.828 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.330 3.670 12 O -0.376 6.376 13 N -0.357 5.357 14 C -0.050 4.050 15 C -0.032 4.032 16 O -0.300 6.300 17 C -0.033 4.033 18 C 0.044 3.956 19 H 0.099 0.901 20 C -0.172 4.172 21 C -0.213 4.213 22 C -0.230 4.230 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.583 -16.221 1.793 17.597 hybrid contribution 1.952 1.526 0.092 2.480 sum 8.535 -14.694 1.884 17.098 Atomic orbital electron populations 1.70003 1.05962 1.27602 1.46714 1.24979 0.95012 0.99000 0.94472 0.86234 0.79264 0.81259 0.78813 1.19920 1.20779 1.19929 1.22819 0.94844 0.91675 1.59177 0.91028 1.85367 1.04797 0.96243 1.96699 1.23605 1.06621 0.95560 1.04580 1.20308 0.86194 0.85853 0.74629 1.90522 1.15342 1.83729 1.47972 1.48183 1.06465 1.05653 1.75438 1.22424 0.80412 1.02409 0.99747 1.23011 0.99503 0.82650 0.98009 1.87938 1.23486 1.25734 1.92793 1.23298 0.80959 1.01354 0.97720 1.21322 0.93029 0.82377 0.98864 0.90086 1.23290 0.95022 0.99753 0.99137 1.22970 1.03436 1.01607 0.93267 1.23089 1.02057 0.92090 1.05813 0.92101 0.89411 0.89350 0.88208 0.90571 0.92437 0.87626 0.87917 0.91919 0.82266 0.89290 0.88685 0.88804 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -3.04 4.52 36.00 0.16 -2.88 16 11 C 0.54 9.97 7.59 -10.99 -0.08 9.88 16 12 O -0.50 -10.58 11.78 5.56 0.07 -10.52 16 13 N -0.62 -8.92 3.02 -164.73 -0.50 -9.41 16 14 C 0.07 0.82 6.55 -3.53 -0.02 0.80 16 15 C 0.05 0.45 6.98 37.31 0.26 0.71 16 16 O -0.38 -4.42 10.74 -35.23 -0.38 -4.80 16 17 C 0.04 0.49 5.35 37.31 0.20 0.69 16 18 C 0.15 1.90 3.54 -67.41 -0.24 1.66 16 19 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 20 C -0.15 -2.16 4.05 -90.61 -0.37 -2.53 16 21 C -0.18 -2.31 9.76 -26.72 -0.26 -2.57 16 22 C -0.19 -2.16 9.89 -26.73 -0.26 -2.42 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.09 1.62 7.87 -51.92 -0.41 1.21 16 25 H 0.09 1.63 7.81 -51.92 -0.41 1.22 16 26 H 0.10 1.07 6.04 -51.93 -0.31 0.75 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.95 6.92 -51.93 -0.36 0.59 16 31 H 0.06 0.72 5.87 -51.93 -0.30 0.42 16 32 H 0.16 2.77 5.46 -53.86 -0.29 2.48 16 33 H 0.09 1.08 5.81 -51.93 -0.30 0.78 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.81 6.85 -51.93 -0.36 0.45 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -32.39 301.05 -8.02 -40.41 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.82 Total: 2.01 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.42 Total: -9.43 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.24 Total: -34.60 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.31 Total: -15.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.39 -8.02 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133461803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.440 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds