Wall clock time and date at job start Mon Mar 30 2020 01:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00065 * 2 1 4 4 H 1.48505 * 109.46828 * 239.99682 * 3 2 1 5 5 H 1.48494 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46854 * 120.00259 * 3 2 1 7 7 C 1.38799 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00185 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99753 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99964 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46789 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00356 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99432 * 180.02562 * 11 10 9 14 14 C 1.47155 * 120.98543 * 354.81513 * 13 11 10 15 15 C 1.53293 * 108.38322 * 129.47991 * 14 13 11 16 16 O 1.42964 * 109.22482 * 52.30447 * 15 14 13 17 17 C 1.42966 * 114.16613 * 297.42196 * 16 15 14 18 18 C 1.47169 * 120.94152 * 174.80093 * 13 11 10 19 19 H 1.09000 * 109.64964 * 110.77551 * 18 13 11 20 20 C 1.53003 * 109.72824 * 350.21692 * 18 13 11 21 21 C 1.53007 * 117.49534 * 265.71135 * 20 18 13 22 22 C 1.53001 * 117.49945 * 197.08756 * 20 18 13 23 23 H 0.97004 * 119.99836 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46658 * 59.99883 * 10 9 7 25 25 H 1.08998 * 109.46648 * 299.99729 * 10 9 7 26 26 H 1.09002 * 109.67617 * 9.75987 * 14 13 11 27 27 H 1.08998 * 109.71215 * 249.22371 * 14 13 11 28 28 H 1.09003 * 109.51483 * 292.38042 * 15 14 13 29 29 H 1.08998 * 109.51291 * 172.22785 * 15 14 13 30 30 H 1.09003 * 109.51225 * 182.50350 * 17 16 15 31 31 H 1.09000 * 109.51015 * 302.60303 * 17 16 15 32 32 H 1.08997 * 115.55297 * 51.41328 * 20 18 13 33 33 H 1.09001 * 117.49895 * 359.97438 * 21 20 18 34 34 H 1.08994 * 117.49619 * 145.02209 * 21 20 18 35 35 H 1.08996 * 117.49822 * 214.97536 * 22 20 18 36 36 H 1.08999 * 117.49699 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0018 14 6 4.2954 -6.1293 -0.1121 15 6 4.9885 -6.9075 1.0122 16 8 4.5431 -8.2658 0.9884 17 6 3.1431 -8.4269 1.2292 18 6 2.3546 -7.7263 0.1168 19 1 2.5082 -8.2491 -0.8272 20 6 0.8651 -7.7198 0.4666 21 6 0.4864 -7.8182 1.9458 22 6 0.2632 -9.0139 1.0177 23 1 -0.4850 0.8401 -0.0004 24 1 3.1243 -3.7314 0.8905 25 1 3.1243 -3.7314 -0.8895 26 1 4.5186 -5.0668 -0.0148 27 1 4.6456 -6.4909 -1.0789 28 1 4.7379 -6.4590 1.9735 29 1 6.0680 -6.8757 0.8651 30 1 2.8951 -9.4883 1.2382 31 1 2.8860 -7.9848 2.1917 32 1 0.2342 -7.1045 -0.1749 33 1 1.2984 -7.8880 2.6696 34 1 -0.3937 -7.2675 2.2776 35 1 -0.7638 -9.2499 0.7390 36 1 0.9284 -9.8699 1.1314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133461803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:05 Heat of formation + Delta-G solvation = -48.651999 kcal Electronic energy + Delta-G solvation = -19146.956978 eV Core-core repulsion = 16144.607315 eV Total energy + Delta-G solvation = -3002.349664 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.79009 -39.30938 -37.99288 -35.75840 -34.59318 -32.13175 -30.92294 -28.37071 -27.64114 -25.88985 -23.71004 -23.11350 -21.96293 -20.41113 -19.46116 -17.91840 -17.86402 -16.99012 -16.88274 -16.80412 -16.34811 -16.17805 -15.67026 -15.63407 -14.90285 -14.62761 -14.53028 -14.35814 -13.46855 -13.20771 -13.05241 -12.87919 -12.81020 -12.62115 -12.55747 -12.21823 -11.95535 -11.74704 -11.44738 -11.14079 -11.10641 -11.06488 -10.27785 -9.85684 -9.55351 -8.67295 -8.35371 -6.13376 1.22879 1.43229 1.43681 1.53496 1.57206 1.96149 2.26849 2.76925 2.98953 3.02204 3.21747 3.52495 3.66548 3.86685 3.91815 4.02433 4.12113 4.15003 4.18554 4.22830 4.27338 4.42873 4.49697 4.71631 4.72560 4.77816 4.83188 4.93425 5.05611 5.24608 5.29506 5.40464 5.67302 6.05104 6.18362 6.25756 7.05979 7.19074 8.73548 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.004851 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.047254 B = 5770.299130 C = 6532.234523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.145 6.145 10 C -0.127 4.127 11 C 0.538 3.462 12 O -0.538 6.538 13 N -0.612 5.612 14 C 0.066 3.934 15 C 0.047 3.953 16 O -0.387 6.387 17 C 0.051 3.949 18 C 0.147 3.853 19 H 0.090 0.910 20 C -0.173 4.173 21 C -0.186 4.186 22 C -0.162 4.162 23 H 0.271 0.729 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 -16.990 2.062 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.082 5.918 10 C -0.278 4.278 11 C 0.326 3.674 12 O -0.415 6.415 13 N -0.348 5.348 14 C -0.057 4.057 15 C -0.030 4.030 16 O -0.305 6.305 17 C -0.026 4.026 18 C 0.044 3.956 19 H 0.108 0.892 20 C -0.191 4.191 21 C -0.223 4.223 22 C -0.199 4.199 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.451 -17.349 2.026 19.860 hybrid contribution 1.098 1.744 -0.001 2.061 sum 10.549 -15.605 2.025 18.945 Atomic orbital electron populations 1.70173 1.07993 1.28680 1.47959 1.26103 0.95920 1.03257 0.93676 0.85027 0.77844 0.75756 0.79528 1.18627 1.20428 1.18624 1.23173 0.95333 0.92071 1.59003 0.89978 1.85533 1.10268 0.99001 1.97004 1.23427 1.03570 0.94794 1.06030 1.20088 0.86153 0.86114 0.75087 1.90571 1.16897 1.84232 1.49836 1.48181 1.07504 1.05437 1.73642 1.22740 0.78255 1.03255 1.01412 1.23153 1.01020 0.81694 0.97135 1.87943 1.23373 1.26537 1.92672 1.23294 0.80586 1.02389 0.96320 1.21482 0.92514 0.81431 1.00185 0.89240 1.22993 0.95551 1.01670 0.98890 1.22965 1.03094 1.03020 0.93229 1.23166 1.02605 0.91617 1.02499 0.91992 0.87835 0.87710 0.87790 0.88871 0.92748 0.84546 0.85490 0.92406 0.86195 0.88011 0.90970 0.88519 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.20 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 10 C -0.13 -5.04 4.52 71.23 0.32 -4.71 16 11 C 0.54 19.96 7.59 87.66 0.67 20.63 16 12 O -0.54 -23.80 11.78 -3.01 -0.04 -23.83 16 13 N -0.61 -16.83 3.02 -793.49 -2.40 -19.22 16 14 C 0.07 1.29 6.55 86.35 0.57 1.85 16 15 C 0.05 0.77 6.98 72.08 0.50 1.28 16 16 O -0.39 -7.59 10.74 -148.98 -1.60 -9.19 16 17 C 0.05 0.98 5.35 72.08 0.39 1.37 16 18 C 0.15 3.54 3.54 44.96 0.16 3.70 16 19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 20 C -0.17 -4.83 4.05 -10.79 -0.04 -4.88 16 21 C -0.19 -4.86 9.76 30.60 0.30 -4.56 16 22 C -0.16 -3.34 9.89 30.60 0.30 -3.03 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.10 3.74 7.87 -2.40 -0.02 3.72 16 25 H 0.10 3.77 7.81 -2.40 -0.02 3.75 16 26 H 0.10 1.95 6.04 -2.39 -0.01 1.94 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.13 1.82 6.92 -2.39 -0.02 1.81 16 31 H 0.06 1.19 5.87 -2.39 -0.01 1.17 16 32 H 0.12 4.42 5.46 -33.00 -0.18 4.24 16 33 H 0.10 2.35 5.81 -2.39 -0.01 2.34 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.12 1.73 6.85 -2.39 -0.02 1.71 16 Total: -1.00 -73.03 301.05 2.31 -70.72 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.92 Total: 18.46 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.27 Total: -17.45 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.11 Total: -74.78 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.64 Total: -33.02 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -73.03 2.31 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133461803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.070 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds