Wall clock time and date at job start Mon Mar 30 2020 01:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47374 * 270.00111 * 3 2 1 5 5 H 1.48502 * 109.47012 * 30.00462 * 3 2 1 6 6 H 1.48503 * 109.46858 * 149.99837 * 3 2 1 7 7 C 1.38802 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99588 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81011 * 99.99845 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46951 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00510 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.47158 * 120.98264 * 5.57198 * 13 11 10 15 15 C 1.53296 * 108.38250 * 230.51392 * 14 13 11 16 16 O 1.42969 * 109.22253 * 307.69230 * 15 14 13 17 17 C 1.42960 * 114.16134 * 62.58565 * 16 15 14 18 18 C 1.47152 * 120.98273 * 185.54923 * 13 11 10 19 19 H 1.09001 * 109.68009 * 249.24905 * 18 13 11 20 20 C 1.52992 * 109.68309 * 9.76292 * 18 13 11 21 21 C 1.53001 * 117.50340 * 186.40915 * 20 18 13 22 22 C 1.52999 * 60.03452 * 107.47800 * 21 20 18 23 23 H 0.97001 * 119.99852 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46998 * 59.99508 * 10 9 7 25 25 H 1.09004 * 109.46562 * 299.99810 * 10 9 7 26 26 H 1.09002 * 109.67738 * 350.23313 * 14 13 11 27 27 H 1.08996 * 109.68259 * 110.78823 * 14 13 11 28 28 H 1.08990 * 109.51865 * 67.62136 * 15 14 13 29 29 H 1.08999 * 109.50931 * 187.72509 * 15 14 13 30 30 H 1.09001 * 109.51175 * 177.49412 * 17 16 15 31 31 H 1.08991 * 109.51592 * 57.34636 * 17 16 15 32 32 H 1.08998 * 115.55188 * 40.73629 * 20 18 13 33 33 H 1.09000 * 117.49901 * 214.98375 * 21 20 18 34 34 H 1.09007 * 117.49444 * 359.96964 * 21 20 18 35 35 H 1.09001 * 117.49553 * 107.50247 * 22 21 20 36 36 H 1.08997 * 117.49737 * 252.52300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0003 14 6 4.2950 -6.1296 0.1211 15 6 4.9932 -6.9039 -1.0027 16 8 4.5478 -8.2623 -0.9856 17 6 3.1490 -8.4226 -1.2336 18 6 2.3562 -7.7261 -0.1217 19 1 2.5055 -8.2521 0.8212 20 6 0.8681 -7.7183 -0.4772 21 6 0.1401 -9.0638 -0.5001 22 6 -0.1255 -8.0703 0.6328 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1244 -3.7313 -0.8906 26 1 4.5186 -5.0668 0.0286 27 1 4.6401 -6.4951 1.0882 28 1 4.7472 -6.4522 -1.9635 29 1 6.0721 -6.8720 -0.8509 30 1 2.9010 -9.4839 -1.2475 31 1 2.8962 -7.9764 -2.1953 32 1 0.5631 -6.9686 -1.2072 33 1 -0.6440 -9.1991 -1.2450 34 1 0.7215 -9.9547 -0.2623 35 1 -1.0845 -7.5521 0.6332 36 1 0.2814 -8.3074 1.6158 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133461973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:08 Heat of formation + Delta-G solvation = -37.525140 kcal Electronic energy + Delta-G solvation = -19056.386358 eV Core-core repulsion = 16054.519191 eV Total energy + Delta-G solvation = -3001.867167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52670 -38.10033 -36.84473 -34.55409 -32.45715 -31.37793 -29.48696 -27.35136 -25.52370 -24.61967 -22.43252 -21.89066 -21.04919 -19.23339 -17.70753 -16.71890 -16.52484 -16.03962 -15.57297 -15.30127 -14.91446 -14.82764 -14.55475 -13.89450 -13.73106 -13.45037 -13.17992 -12.57764 -12.40109 -12.00491 -11.62111 -11.42254 -11.32235 -11.08506 -11.04560 -10.93312 -10.78064 -10.42621 -10.27767 -10.07317 -9.83131 -9.09238 -8.68240 -8.41567 -8.26196 -6.53075 -6.24491 -3.95161 2.78368 3.01365 3.20244 3.22150 3.27889 3.51215 3.61088 4.00394 4.17642 4.53815 4.64193 4.84855 4.86291 5.03568 5.03908 5.10969 5.15368 5.17767 5.34632 5.38610 5.48225 5.53321 5.59220 5.68644 5.72070 5.78322 5.85586 6.07166 6.09212 6.30590 6.38878 6.67418 6.89602 7.50901 7.56832 8.32199 8.54069 9.20981 10.82933 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.004886 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.540672 B = 5729.199458 C = 6623.318065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.535 3.465 12 O -0.496 6.496 13 N -0.622 5.622 14 C 0.074 3.926 15 C 0.046 3.954 16 O -0.382 6.382 17 C 0.055 3.945 18 C 0.148 3.852 19 H 0.073 0.927 20 C -0.129 4.129 21 C -0.197 4.197 22 C -0.154 4.154 23 H 0.269 0.731 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.272 -16.146 -1.360 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.323 3.677 12 O -0.370 6.370 13 N -0.359 5.359 14 C -0.049 4.049 15 C -0.032 4.032 16 O -0.300 6.300 17 C -0.022 4.022 18 C 0.044 3.956 19 H 0.091 0.909 20 C -0.147 4.147 21 C -0.235 4.235 22 C -0.191 4.191 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.439 -16.467 -1.317 17.731 hybrid contribution 1.893 1.595 0.061 2.476 sum 8.332 -14.872 -1.256 17.093 Atomic orbital electron populations 1.70014 1.05965 1.27483 1.46821 1.24984 0.95013 0.99016 0.94489 0.86175 0.79431 0.81579 0.78368 1.20252 1.20726 1.19682 1.22857 0.94876 0.91663 1.59032 0.90983 1.85368 1.04862 0.96284 1.96692 1.23596 1.06576 0.95580 1.04545 1.20294 0.86311 0.85835 0.75266 1.90712 1.15004 1.84312 1.46951 1.48195 1.06530 1.05617 1.75605 1.22420 0.80422 1.02411 0.99692 1.23009 0.99466 0.82669 0.98028 1.87940 1.23683 1.25711 1.92671 1.22999 0.80682 1.01340 0.97194 1.21380 0.93008 0.82520 0.98647 0.90863 1.22292 0.90571 0.97546 1.04307 1.23139 1.03907 0.93518 1.02899 1.22783 1.01221 1.01777 0.93324 0.92164 0.89417 0.89446 0.88227 0.90684 0.92374 0.87661 0.87820 0.92321 0.85669 0.88904 0.89441 0.88624 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.03 4.53 36.00 0.16 -2.87 16 11 C 0.53 9.88 7.52 -10.99 -0.08 9.80 16 12 O -0.50 -10.52 11.60 5.56 0.06 -10.46 16 13 N -0.62 -8.97 3.02 -164.75 -0.50 -9.47 16 14 C 0.07 0.83 6.55 -3.53 -0.02 0.81 16 15 C 0.05 0.45 6.98 37.31 0.26 0.71 16 16 O -0.38 -4.38 10.74 -35.23 -0.38 -4.76 16 17 C 0.06 0.61 6.13 37.31 0.23 0.83 16 18 C 0.15 1.90 3.24 -67.43 -0.22 1.69 16 19 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 20 C -0.13 -1.80 3.20 -90.58 -0.29 -2.09 16 21 C -0.20 -2.20 10.07 -26.73 -0.27 -2.47 16 22 C -0.15 -2.11 9.51 -26.69 -0.25 -2.36 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.09 1.63 7.80 -51.92 -0.40 1.23 16 25 H 0.09 1.61 7.88 -51.91 -0.41 1.20 16 26 H 0.10 1.07 6.04 -51.93 -0.31 0.76 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.13 2.12 6.40 -51.93 -0.33 1.79 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -32.63 308.18 -8.18 -40.80 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.22 Total: 0.82 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.29 Total: -8.74 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.24 Total: -34.70 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.31 Total: -15.22 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.63 -8.18 -40.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133461973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.276 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds