Wall clock time and date at job start Mon Mar 30 2020 01:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47374 * 270.00111 * 3 2 1 5 5 H 1.48502 * 109.47012 * 30.00462 * 3 2 1 6 6 H 1.48503 * 109.46858 * 149.99837 * 3 2 1 7 7 C 1.38802 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99588 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81011 * 99.99845 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46951 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00510 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.47158 * 120.98264 * 5.57198 * 13 11 10 15 15 C 1.53296 * 108.38250 * 230.51392 * 14 13 11 16 16 O 1.42969 * 109.22253 * 307.69230 * 15 14 13 17 17 C 1.42960 * 114.16134 * 62.58565 * 16 15 14 18 18 C 1.47152 * 120.98273 * 185.54923 * 13 11 10 19 19 H 1.09001 * 109.68009 * 249.24905 * 18 13 11 20 20 C 1.52992 * 109.68309 * 9.76292 * 18 13 11 21 21 C 1.53001 * 117.50340 * 186.40915 * 20 18 13 22 22 C 1.52999 * 60.03452 * 107.47800 * 21 20 18 23 23 H 0.97001 * 119.99852 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46998 * 59.99508 * 10 9 7 25 25 H 1.09004 * 109.46562 * 299.99810 * 10 9 7 26 26 H 1.09002 * 109.67738 * 350.23313 * 14 13 11 27 27 H 1.08996 * 109.68259 * 110.78823 * 14 13 11 28 28 H 1.08990 * 109.51865 * 67.62136 * 15 14 13 29 29 H 1.08999 * 109.50931 * 187.72509 * 15 14 13 30 30 H 1.09001 * 109.51175 * 177.49412 * 17 16 15 31 31 H 1.08991 * 109.51592 * 57.34636 * 17 16 15 32 32 H 1.08998 * 115.55188 * 40.73629 * 20 18 13 33 33 H 1.09000 * 117.49901 * 214.98375 * 21 20 18 34 34 H 1.09007 * 117.49444 * 359.96964 * 21 20 18 35 35 H 1.09001 * 117.49553 * 107.50247 * 22 21 20 36 36 H 1.08997 * 117.49737 * 252.52300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0003 14 6 4.2950 -6.1296 0.1211 15 6 4.9932 -6.9039 -1.0027 16 8 4.5478 -8.2623 -0.9856 17 6 3.1490 -8.4226 -1.2336 18 6 2.3562 -7.7261 -0.1217 19 1 2.5055 -8.2521 0.8212 20 6 0.8681 -7.7183 -0.4772 21 6 0.1401 -9.0638 -0.5001 22 6 -0.1255 -8.0703 0.6328 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1244 -3.7313 -0.8906 26 1 4.5186 -5.0668 0.0286 27 1 4.6401 -6.4951 1.0882 28 1 4.7472 -6.4522 -1.9635 29 1 6.0721 -6.8720 -0.8509 30 1 2.9010 -9.4839 -1.2475 31 1 2.8962 -7.9764 -2.1953 32 1 0.5631 -6.9686 -1.2072 33 1 -0.6440 -9.1991 -1.2450 34 1 0.7215 -9.9547 -0.2623 35 1 -1.0845 -7.5521 0.6332 36 1 0.2814 -8.3074 1.6158 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133461973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:07 Heat of formation + Delta-G solvation = -59.074637 kcal Electronic energy + Delta-G solvation = -19057.320814 eV Core-core repulsion = 16054.519191 eV Total energy + Delta-G solvation = -3002.801623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67755 -39.24193 -37.90315 -35.72196 -34.59812 -32.36540 -30.89123 -28.47645 -27.64624 -25.57712 -23.47182 -22.89953 -22.12937 -20.60727 -19.54606 -17.98828 -17.59794 -17.03586 -16.89257 -16.80876 -16.26109 -16.16335 -15.81857 -15.32811 -14.98275 -14.68793 -14.48321 -14.24580 -13.53278 -13.29144 -13.17840 -12.90355 -12.63356 -12.48816 -12.43752 -12.24470 -11.95694 -11.73833 -11.49136 -11.22585 -11.16015 -11.12081 -10.27806 -9.99380 -9.53565 -8.67808 -8.36036 -6.13931 1.22984 1.41562 1.43680 1.54638 1.58176 1.96811 2.26295 2.80056 2.97071 2.98439 3.22308 3.54637 3.67303 3.92744 3.93793 4.02506 4.13205 4.18106 4.24681 4.25195 4.39991 4.44132 4.49445 4.59718 4.75171 4.79181 4.84030 4.91423 5.05242 5.27066 5.30519 5.40315 5.55986 6.06905 6.18128 6.24730 7.05487 7.15845 8.73173 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.004886 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.540672 B = 5729.199458 C = 6623.318065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.533 6.533 13 N -0.614 5.614 14 C 0.066 3.934 15 C 0.047 3.953 16 O -0.388 6.388 17 C 0.062 3.938 18 C 0.148 3.852 19 H 0.083 0.917 20 C -0.142 4.142 21 C -0.161 4.161 22 C -0.173 4.173 23 H 0.271 0.729 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 -17.268 -1.461 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.277 4.277 11 C 0.319 3.681 12 O -0.410 6.410 13 N -0.350 5.350 14 C -0.056 4.056 15 C -0.030 4.030 16 O -0.306 6.306 17 C -0.016 4.016 18 C 0.045 3.955 19 H 0.101 0.899 20 C -0.161 4.161 21 C -0.198 4.198 22 C -0.211 4.211 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.266 -17.626 -1.421 19.964 hybrid contribution 1.057 1.829 0.094 2.114 sum 10.322 -15.798 -1.327 18.918 Atomic orbital electron populations 1.70180 1.08001 1.28617 1.48034 1.26109 0.95925 1.03272 0.93686 0.84968 0.78244 0.76050 0.78823 1.19273 1.20339 1.18135 1.23200 0.95326 0.92056 1.58892 0.89990 1.85535 1.10318 0.99044 1.96998 1.23411 1.03529 0.94780 1.05993 1.20061 0.86240 0.86115 0.75673 1.90722 1.16583 1.84772 1.48892 1.48194 1.07583 1.05436 1.73819 1.22732 0.78264 1.03249 1.01345 1.23146 1.00956 0.81735 0.97146 1.87944 1.23602 1.26486 1.92545 1.23019 0.80274 1.02464 0.95799 1.21556 0.92488 0.81518 0.99945 0.89931 1.22097 0.91539 0.98786 1.03673 1.23206 1.02903 0.92936 1.00744 1.22754 1.00329 1.03632 0.94339 0.91994 0.87841 0.87806 0.87834 0.89045 0.92662 0.84591 0.85262 0.92929 0.89311 0.88258 0.86415 0.91055 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 10 C -0.13 -5.01 4.53 71.23 0.32 -4.69 16 11 C 0.53 19.81 7.52 87.66 0.66 20.47 16 12 O -0.53 -23.62 11.60 -3.01 -0.03 -23.66 16 13 N -0.61 -16.96 3.02 -793.54 -2.40 -19.35 16 14 C 0.07 1.31 6.55 86.35 0.57 1.87 16 15 C 0.05 0.78 6.98 72.08 0.50 1.28 16 16 O -0.39 -7.57 10.74 -148.98 -1.60 -9.17 16 17 C 0.06 1.18 6.13 72.08 0.44 1.62 16 18 C 0.15 3.55 3.24 44.96 0.15 3.70 16 19 H 0.08 1.87 7.98 -2.39 -0.02 1.85 16 20 C -0.14 -3.95 3.20 -10.77 -0.03 -3.99 16 21 C -0.16 -3.30 10.07 30.59 0.31 -2.99 16 22 C -0.17 -4.80 9.51 30.62 0.29 -4.51 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.10 3.76 7.80 -2.40 -0.02 3.74 16 25 H 0.10 3.75 7.88 -2.39 -0.02 3.73 16 26 H 0.10 1.96 6.04 -2.39 -0.01 1.95 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.13 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 3.16 6.40 -2.39 -0.02 3.15 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -73.50 308.18 2.50 -70.99 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.07 Total: 17.08 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.32 Total: -16.35 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.11 Total: -74.99 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.64 Total: -32.83 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -73.50 2.50 -70.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133461973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.920 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds