Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47047 * 2 1 4 4 H 1.09000 * 109.46918 * 54.83026 * 3 2 1 5 5 C 1.50699 * 109.47173 * 174.82807 * 3 2 1 6 6 H 1.08005 * 119.99680 * 119.99622 * 5 3 2 7 7 C 1.37876 * 120.00185 * 299.99913 * 5 3 2 8 8 N 1.31514 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99901 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47266 * 90.00314 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00117 * 9 7 5 12 12 H 1.48505 * 109.46952 * 329.99857 * 9 7 5 13 13 N 1.46895 * 109.46681 * 294.83072 * 3 2 1 14 14 C 1.46907 * 110.99701 * 152.31366 * 13 3 2 15 15 C 1.50697 * 109.46998 * 178.64061 * 14 13 3 16 16 C 1.38251 * 119.98220 * 259.72469 * 15 14 13 17 17 C 1.38187 * 120.03870 * 179.72814 * 16 15 14 18 18 C 1.38490 * 119.99789 * 0.54511 * 17 16 15 19 19 F 1.35096 * 120.01330 * 179.75067 * 18 17 16 20 20 C 1.38414 * 119.96506 * 359.72643 * 18 17 16 21 21 C 1.38337 * 119.96036 * 0.02562 * 20 18 17 22 22 Cl 1.73599 * 119.99765 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.46848 * 185.44075 * 1 2 3 24 24 H 1.08997 * 109.47755 * 305.44243 * 1 2 3 25 25 H 1.09005 * 109.46875 * 65.44756 * 1 2 3 26 26 H 1.08992 * 109.47631 * 239.99926 * 2 1 3 27 27 H 1.09002 * 109.46760 * 119.99114 * 2 1 3 28 28 H 0.97002 * 119.99945 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00522 * 28.36144 * 13 3 2 30 30 H 1.09000 * 109.46707 * 298.63691 * 14 13 3 31 31 H 1.08992 * 109.47312 * 58.63667 * 14 13 3 32 32 H 1.07999 * 119.97756 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.99719 * 180.27487 * 17 16 15 34 34 H 1.07998 * 120.01870 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6030 1.9824 0.8401 5 6 3.5415 1.4445 0.1281 6 1 4.1490 1.8883 -0.6469 7 6 4.1398 0.8798 1.2345 8 7 3.4001 0.3389 2.1778 9 14 6.0011 0.8816 1.3928 10 1 6.4369 2.1151 2.0953 11 1 6.4331 -0.3087 2.1686 12 1 6.6129 0.8396 0.0403 13 7 1.6548 2.0980 -1.2569 14 6 1.5134 3.5485 -1.0724 15 6 1.1512 4.1892 -2.3875 16 6 2.1250 4.8172 -3.1415 17 6 1.7952 5.4002 -4.3502 18 6 0.4863 5.3654 -4.8014 19 9 0.1626 5.9396 -5.9807 20 6 -0.4898 4.7415 -4.0439 21 6 -0.1569 4.1540 -2.8365 22 17 -1.3805 3.3719 -1.8853 23 1 -0.3633 -1.0230 0.0974 24 1 -0.3634 0.5959 0.8372 25 1 -0.3633 0.4270 -0.9348 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.8211 -0.0588 2.9560 29 1 0.8072 1.6965 -1.6292 30 1 0.7282 3.7471 -0.3430 31 1 2.4557 3.9627 -0.7138 32 1 3.1450 4.8480 -2.7879 33 1 2.5573 5.8867 -4.9408 34 1 -1.5106 4.7135 -4.3951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135040199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -37.354790 kcal Electronic energy + Delta-G solvation = -18345.301254 eV Core-core repulsion = 15217.937462 eV Total energy + Delta-G solvation = -3127.363791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.99422 -39.33322 -36.42224 -36.28001 -33.03050 -31.59647 -30.98602 -29.66959 -26.66781 -24.50667 -23.13984 -22.61346 -21.17064 -19.56768 -17.85272 -16.73146 -16.25337 -15.72604 -15.70804 -14.84077 -14.76067 -14.25784 -13.95686 -13.81617 -13.51205 -13.17237 -12.74481 -12.30723 -12.15607 -11.68201 -11.51471 -11.32195 -11.16947 -11.05651 -10.89695 -10.76487 -10.61336 -9.95817 -9.72762 -9.65101 -9.14191 -9.00259 -8.53176 -8.35325 -7.26819 -5.97306 -4.01602 0.97723 1.07640 2.07308 3.31384 3.38532 3.41808 3.43374 4.18659 4.44210 4.66165 4.83073 4.86331 5.16799 5.31037 5.49348 5.54867 5.81613 5.90793 5.95178 6.09445 6.17084 6.17659 6.33024 6.42962 6.55520 6.71966 6.85093 7.06735 7.16766 7.45753 7.76951 7.90346 8.25198 8.38011 8.71749 9.05895 9.63376 11.08066 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.005315 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.918738 B = 5266.614971 C = 6288.072753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.098 3.902 15 C -0.063 4.063 16 C -0.062 4.062 17 C -0.149 4.149 18 C 0.097 3.903 19 F -0.139 7.139 20 C -0.149 4.149 21 C -0.010 4.010 22 Cl -0.055 7.055 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.259 0.741 29 H 0.320 0.680 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 8.421 -9.865 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.031 4.031 15 C -0.064 4.064 16 C -0.081 4.081 17 C -0.168 4.168 18 C 0.078 3.922 19 F -0.118 7.118 20 C -0.168 4.168 21 C -0.037 4.037 22 Cl -0.026 7.026 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.526 8.302 -9.855 14.444 hybrid contribution -0.083 0.005 0.462 0.470 sum -6.609 8.307 -9.393 14.174 Atomic orbital electron populations 1.21885 0.99586 0.99703 0.99610 1.21783 0.91242 1.00312 1.03133 1.19185 0.95485 0.89953 0.84149 0.97787 1.21206 0.91136 1.36483 1.04381 0.92002 1.24957 0.98079 0.95627 0.95851 1.69871 1.34733 1.39317 1.09654 0.86556 0.85819 0.77336 0.78013 1.20906 1.21404 1.19925 1.60828 1.37475 1.00092 1.32644 1.20891 1.01213 0.91154 0.89859 1.20163 0.90676 0.97066 0.98526 1.20980 0.99853 0.94701 0.92534 1.21244 0.94822 1.02665 0.98032 1.17405 0.93565 0.98263 0.82996 1.91495 1.93425 1.82471 1.44382 1.20863 1.00304 1.01186 0.94462 1.20577 0.90321 0.99421 0.93380 1.98386 1.53905 1.79006 1.71341 0.94380 0.93900 0.94597 0.94033 0.88149 0.93079 0.86179 0.94606 0.89386 0.83642 0.84326 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.65 37.16 0.36 -2.57 16 2 C -0.13 -2.94 5.34 -26.73 -0.14 -3.09 16 3 C 0.22 5.31 2.03 -68.86 -0.14 5.17 16 4 H 0.00 0.12 7.78 -51.93 -0.40 -0.28 16 5 C -0.49 -13.19 8.71 -34.44 -0.30 -13.49 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.99 6.28 -109.22 -0.69 -14.67 16 14 C 0.10 1.76 5.03 -4.97 -0.03 1.73 16 15 C -0.06 -0.95 5.41 -104.58 -0.57 -1.51 16 16 C -0.06 -0.81 9.67 -39.60 -0.38 -1.20 16 17 C -0.15 -1.74 10.03 -39.51 -0.40 -2.14 16 18 C 0.10 1.20 7.30 -39.42 -0.29 0.92 16 19 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 20 C -0.15 -1.86 9.81 -39.48 -0.39 -2.25 16 21 C -0.01 -0.13 6.31 -39.51 -0.25 -0.38 16 22 Cl -0.06 -0.78 26.75 -51.86 -1.39 -2.16 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.64 6.63 -51.93 -0.34 0.29 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.32 6.24 5.76 -39.29 -0.23 6.02 16 30 H 0.04 0.65 7.29 -51.93 -0.38 0.27 16 31 H 0.09 1.64 7.94 -51.93 -0.41 1.23 16 32 H 0.15 1.75 8.03 -52.49 -0.42 1.33 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -27.48 303.08 -8.63 -36.11 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.15 Total: 3.63 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.61 Total: -17.40 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.06 Total: -39.09 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.39 Total: -2.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.48 -8.63 -36.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.248 kcal (2) G-P(sol) polarization free energy of solvation -27.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds