Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47047 * 2 1 4 4 H 1.09000 * 109.46918 * 54.83026 * 3 2 1 5 5 C 1.50699 * 109.47173 * 174.82807 * 3 2 1 6 6 H 1.08005 * 119.99680 * 119.99622 * 5 3 2 7 7 C 1.37876 * 120.00185 * 299.99913 * 5 3 2 8 8 N 1.31514 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99901 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47266 * 90.00314 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00117 * 9 7 5 12 12 H 1.48505 * 109.46952 * 329.99857 * 9 7 5 13 13 N 1.46895 * 109.46681 * 294.83072 * 3 2 1 14 14 C 1.46907 * 110.99701 * 152.31366 * 13 3 2 15 15 C 1.50697 * 109.46998 * 178.64061 * 14 13 3 16 16 C 1.38251 * 119.98220 * 259.72469 * 15 14 13 17 17 C 1.38187 * 120.03870 * 179.72814 * 16 15 14 18 18 C 1.38490 * 119.99789 * 0.54511 * 17 16 15 19 19 F 1.35096 * 120.01330 * 179.75067 * 18 17 16 20 20 C 1.38414 * 119.96506 * 359.72643 * 18 17 16 21 21 C 1.38337 * 119.96036 * 0.02562 * 20 18 17 22 22 Cl 1.73599 * 119.99765 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.46848 * 185.44075 * 1 2 3 24 24 H 1.08997 * 109.47755 * 305.44243 * 1 2 3 25 25 H 1.09005 * 109.46875 * 65.44756 * 1 2 3 26 26 H 1.08992 * 109.47631 * 239.99926 * 2 1 3 27 27 H 1.09002 * 109.46760 * 119.99114 * 2 1 3 28 28 H 0.97002 * 119.99945 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00522 * 28.36144 * 13 3 2 30 30 H 1.09000 * 109.46707 * 298.63691 * 14 13 3 31 31 H 1.08992 * 109.47312 * 58.63667 * 14 13 3 32 32 H 1.07999 * 119.97756 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.99719 * 180.27487 * 17 16 15 34 34 H 1.07998 * 120.01870 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6030 1.9824 0.8401 5 6 3.5415 1.4445 0.1281 6 1 4.1490 1.8883 -0.6469 7 6 4.1398 0.8798 1.2345 8 7 3.4001 0.3389 2.1778 9 14 6.0011 0.8816 1.3928 10 1 6.4369 2.1151 2.0953 11 1 6.4331 -0.3087 2.1686 12 1 6.6129 0.8396 0.0403 13 7 1.6548 2.0980 -1.2569 14 6 1.5134 3.5485 -1.0724 15 6 1.1512 4.1892 -2.3875 16 6 2.1250 4.8172 -3.1415 17 6 1.7952 5.4002 -4.3502 18 6 0.4863 5.3654 -4.8014 19 9 0.1626 5.9396 -5.9807 20 6 -0.4898 4.7415 -4.0439 21 6 -0.1569 4.1540 -2.8365 22 17 -1.3805 3.3719 -1.8853 23 1 -0.3633 -1.0230 0.0974 24 1 -0.3634 0.5959 0.8372 25 1 -0.3633 0.4270 -0.9348 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.8211 -0.0588 2.9560 29 1 0.8072 1.6965 -1.6292 30 1 0.7282 3.7471 -0.3430 31 1 2.4557 3.9627 -0.7138 32 1 3.1450 4.8480 -2.7879 33 1 2.5573 5.8867 -4.9408 34 1 -1.5106 4.7135 -4.3951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135040199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -51.894487 kcal Electronic energy + Delta-G solvation = -18345.931742 eV Core-core repulsion = 15217.937462 eV Total energy + Delta-G solvation = -3127.994280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.96797 -40.42926 -38.00462 -37.49785 -34.72150 -33.37191 -32.00642 -31.06893 -28.50327 -26.02761 -24.36331 -24.14322 -22.37121 -21.43805 -18.85533 -18.36503 -17.73360 -16.94941 -16.77723 -16.63399 -15.95900 -15.71087 -15.56805 -14.85460 -14.69453 -14.52266 -14.42213 -13.82206 -13.63587 -13.21684 -13.01731 -12.82282 -12.64647 -12.51478 -12.35604 -12.26795 -12.01323 -11.87551 -11.53595 -11.43777 -11.03849 -10.40305 -10.02201 -9.64397 -9.00501 -8.03206 -6.14989 -0.06262 0.05862 1.00043 1.44301 1.46106 1.56132 2.37652 2.47789 3.18158 3.22524 3.61674 3.67458 3.91487 3.98867 4.11396 4.44559 4.47734 4.55603 4.60713 4.69489 4.86187 4.87388 4.92241 5.07625 5.11425 5.21778 5.35708 5.41340 5.58686 5.70847 5.77543 5.90351 6.37010 6.49543 6.94882 6.98465 7.53900 9.00191 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.005315 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.918738 B = 5266.614971 C = 6288.072753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.028 1.028 5 C -0.509 4.509 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.678 5.678 14 C 0.104 3.896 15 C -0.081 4.081 16 C -0.065 4.065 17 C -0.138 4.138 18 C 0.099 3.901 19 F -0.136 7.136 20 C -0.145 4.145 21 C -0.016 4.016 22 Cl -0.060 7.060 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 9.153 -11.487 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.010 1.010 5 C -0.547 4.547 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.310 5.310 14 C -0.025 4.025 15 C -0.082 4.082 16 C -0.083 4.083 17 C -0.156 4.156 18 C 0.080 3.920 19 F -0.115 7.115 20 C -0.164 4.164 21 C -0.044 4.044 22 Cl -0.031 7.031 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.444 9.047 -11.494 15.984 hybrid contribution -0.139 -0.165 0.904 0.930 sum -6.583 8.882 -10.590 15.309 Atomic orbital electron populations 1.21745 0.96581 1.01053 1.00237 1.21622 0.93949 0.99221 1.01311 1.18949 0.94241 0.90454 0.84576 1.01015 1.21475 0.92552 1.36398 1.04313 0.92720 1.25674 1.02194 0.95360 0.95608 1.70005 1.36269 1.39861 1.09997 0.85594 0.80873 0.77346 0.77999 1.20335 1.21237 1.19478 1.60708 1.38028 1.01656 1.30583 1.20753 1.00362 0.89574 0.91802 1.19941 0.91833 0.98713 0.97758 1.21095 0.99854 0.94484 0.92890 1.21479 0.95286 1.01532 0.97321 1.17504 0.93790 0.97824 0.82927 1.91511 1.93426 1.82344 1.44179 1.21023 1.01393 1.00371 0.93661 1.20599 0.89818 0.99972 0.93967 1.98382 1.53975 1.79182 1.71604 0.92411 0.94503 0.92913 0.94507 0.91157 0.93157 0.85416 0.95219 0.90748 0.82865 0.81499 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 9.65 71.98 0.69 -4.61 16 2 C -0.12 -5.78 5.34 30.60 0.16 -5.62 16 3 C 0.23 11.17 2.03 44.17 0.09 11.26 16 4 H -0.03 -1.53 7.78 -2.39 -0.02 -1.54 16 5 C -0.51 -27.65 8.71 25.60 0.22 -27.43 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.53 5.29 84.65 0.45 0.98 16 8 N -0.92 -52.45 11.29 21.45 0.24 -52.21 16 9 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.68 -28.08 6.28 -499.46 -3.14 -31.22 16 14 C 0.10 3.77 5.03 85.55 0.43 4.20 16 15 C -0.08 -2.37 5.41 -19.84 -0.11 -2.48 16 16 C -0.06 -1.59 9.67 22.26 0.22 -1.37 16 17 C -0.14 -2.82 10.03 22.32 0.22 -2.60 16 18 C 0.10 2.17 7.30 22.37 0.16 2.34 16 19 F -0.14 -2.93 17.27 44.97 0.78 -2.16 16 20 C -0.15 -3.30 9.81 22.34 0.22 -3.08 16 21 C -0.02 -0.43 6.31 22.32 0.14 -0.29 16 22 Cl -0.06 -1.64 26.75 -2.72 -0.07 -1.71 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.82 6.63 -2.38 -0.02 1.80 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.33 12.62 5.76 -89.69 -0.52 12.11 16 30 H 0.03 1.10 7.29 -2.39 -0.02 1.09 16 31 H 0.07 2.85 7.94 -2.39 -0.02 2.83 16 32 H 0.15 3.47 8.03 -2.91 -0.02 3.44 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -58.68 303.08 3.33 -55.35 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.60 Total: 15.22 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 2.90 Total: -28.70 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.90 Total: -83.43 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.71 kcal Total: -58.68 3.33 -55.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.451 kcal (2) G-P(sol) polarization free energy of solvation -58.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds