Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 H 1.08994 * 109.47213 * 177.96834 * 3 2 1 5 5 C 1.50702 * 109.47041 * 57.97000 * 3 2 1 6 6 H 1.07994 * 119.99994 * 240.00293 * 5 3 2 7 7 C 1.37880 * 120.00051 * 59.99877 * 5 3 2 8 8 N 1.31513 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00078 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47320 * 60.00091 * 9 7 5 11 11 H 1.48498 * 109.47445 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47234 * 299.99996 * 9 7 5 13 13 N 1.46894 * 109.46997 * 297.97051 * 3 2 1 14 14 C 1.46896 * 111.00216 * 273.74830 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.81668 * 14 13 3 16 16 C 1.38249 * 119.97683 * 259.72406 * 15 14 13 17 17 C 1.38180 * 120.03778 * 179.72281 * 16 15 14 18 18 C 1.38489 * 120.00114 * 0.55325 * 17 16 15 19 19 F 1.35095 * 120.02371 * 179.74875 * 18 17 16 20 20 C 1.38420 * 119.96307 * 359.71946 * 18 17 16 21 21 C 1.38339 * 119.95715 * 0.02562 * 20 18 17 22 22 Cl 1.73600 * 119.99848 * 179.97438 * 21 20 18 23 23 H 1.08995 * 109.47419 * 174.45326 * 1 2 3 24 24 H 1.08997 * 109.47238 * 54.44218 * 1 2 3 25 25 H 1.09005 * 109.46792 * 294.44871 * 1 2 3 26 26 H 1.09001 * 109.47015 * 120.00083 * 2 1 3 27 27 H 1.09004 * 109.46986 * 240.00116 * 2 1 3 28 28 H 0.96998 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.00908 * 111.00279 * 149.79279 * 13 3 2 30 30 H 1.09006 * 109.46730 * 294.81168 * 14 13 3 31 31 H 1.08996 * 109.47238 * 54.80630 * 14 13 3 32 32 H 1.07997 * 119.98073 * 359.97438 * 16 15 14 33 33 H 1.07996 * 120.00224 * 180.27327 * 17 16 15 34 34 H 1.07997 * 120.02657 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4971 2.1673 1.2045 6 1 0.8800 3.0440 1.0744 7 6 1.7880 1.7111 2.4727 8 7 2.5390 0.6432 2.6312 9 14 1.1144 2.6091 3.9658 10 1 -0.3698 2.6082 3.9160 11 1 1.5680 1.9232 5.2023 12 1 1.6089 4.0093 3.9660 13 7 1.5909 2.1207 -1.2232 14 6 2.5280 1.8858 -2.3298 15 6 1.9724 2.4873 -3.5949 16 6 1.3465 1.6802 -4.5266 17 6 0.8315 2.2313 -5.6844 18 6 0.9523 3.5911 -5.9173 19 9 0.4534 4.1296 -7.0514 20 6 1.5839 4.3985 -4.9870 21 6 2.0942 3.8458 -3.8260 22 17 2.8871 4.8572 -2.6589 23 1 -0.3634 -1.0228 -0.0993 24 1 -0.3633 0.5976 -0.8360 25 1 -0.3633 0.4254 0.9356 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.7440 0.3224 3.5233 29 1 1.4615 3.1084 -1.0624 30 1 3.4872 2.3490 -2.0981 31 1 2.6662 0.8134 -2.4674 32 1 1.2564 0.6190 -4.3476 33 1 0.3388 1.6010 -6.4098 34 1 1.6782 5.4591 -5.1674 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135040217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -37.246583 kcal Electronic energy + Delta-G solvation = -18351.655438 eV Core-core repulsion = 15224.296339 eV Total energy + Delta-G solvation = -3127.359099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.00440 -39.34557 -36.38465 -36.23441 -33.13611 -31.26151 -30.98758 -29.65541 -26.48383 -24.29319 -23.25450 -23.00947 -21.32920 -19.02336 -17.87231 -16.82937 -16.49136 -15.72487 -15.42766 -14.88007 -14.60257 -14.30657 -13.86037 -13.78270 -13.50692 -13.13265 -12.86522 -12.18198 -12.09138 -11.70021 -11.43765 -11.32516 -11.16674 -10.91322 -10.83949 -10.71439 -10.39151 -10.10977 -9.74667 -9.38352 -9.02442 -8.82983 -8.56017 -8.45542 -7.28953 -6.02461 -4.07570 0.96821 1.05857 2.10652 3.30855 3.35565 3.37957 3.41325 4.17296 4.40302 4.64013 4.80714 4.84560 5.14309 5.28848 5.46554 5.53424 5.79118 5.87000 5.90472 6.06756 6.19005 6.46792 6.51732 6.67926 6.70944 6.84495 7.21611 7.26720 7.48343 7.72662 7.78306 7.82563 8.23428 8.34869 8.62738 9.00295 9.57034 11.03536 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.004941 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.147329 B = 5665.896406 C = 6236.372997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.091 3.909 15 C -0.061 4.061 16 C -0.064 4.064 17 C -0.149 4.149 18 C 0.098 3.902 19 F -0.139 7.139 20 C -0.148 4.148 21 C -0.008 4.008 22 Cl -0.051 7.051 23 H 0.012 0.988 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.010 0.990 28 H 0.261 0.739 29 H 0.334 0.666 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 3.596 -14.610 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.039 4.039 15 C -0.063 4.063 16 C -0.083 4.083 17 C -0.168 4.168 18 C 0.078 3.922 19 F -0.118 7.118 20 C -0.168 4.168 21 C -0.035 4.035 22 Cl -0.021 7.021 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.937 3.070 -14.552 14.902 hybrid contribution 0.328 1.242 0.995 1.625 sum -0.609 4.311 -13.557 14.239 Atomic orbital electron populations 1.21441 0.97492 0.97095 1.01642 1.21434 0.95105 0.98148 0.99314 1.19135 0.93421 0.91594 0.84899 0.98024 1.21119 1.31724 1.11958 0.90295 0.92407 1.24856 0.95057 0.94993 0.98778 1.69869 1.37343 1.23041 1.22492 0.86651 0.79474 0.79762 0.82076 1.20202 1.21349 1.20395 1.60785 1.46393 1.16763 1.07003 1.20938 0.94309 1.00165 0.88476 1.20081 0.97654 0.91166 0.97367 1.20916 0.95124 1.00632 0.91646 1.21215 1.02788 0.93236 0.99585 1.17409 0.99149 0.91803 0.83833 1.91496 1.85471 1.86562 1.48238 1.20886 1.01455 1.00964 0.93459 1.20586 0.99739 0.91536 0.91666 1.98403 1.78221 1.67958 1.57565 0.96887 0.93436 0.92947 0.89610 0.97174 0.92910 0.84836 0.94305 0.90316 0.83920 0.84379 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.46 37.16 0.35 -2.27 16 2 C -0.10 -2.37 5.58 -26.73 -0.15 -2.52 16 3 C 0.22 5.21 2.30 -68.86 -0.16 5.05 16 4 H 0.00 0.06 7.84 -51.93 -0.41 -0.35 16 5 C -0.51 -13.49 7.34 -34.44 -0.25 -13.74 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.67 11.34 55.43 0.63 -24.05 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.73 5.50 -109.23 -0.60 -14.33 16 14 C 0.09 1.54 5.02 -4.98 -0.03 1.51 16 15 C -0.06 -0.89 5.44 -104.58 -0.57 -1.46 16 16 C -0.06 -0.80 9.66 -39.60 -0.38 -1.18 16 17 C -0.15 -1.69 10.03 -39.51 -0.40 -2.08 16 18 C 0.10 1.19 7.30 -39.42 -0.29 0.90 16 19 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 20 C -0.15 -1.85 9.81 -39.48 -0.39 -2.24 16 21 C -0.01 -0.11 6.31 -39.51 -0.25 -0.36 16 22 Cl -0.05 -0.73 26.74 -51.86 -1.39 -2.12 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 25 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 26 H 0.09 2.24 6.12 -51.93 -0.32 1.93 16 27 H 0.01 0.21 7.43 -51.93 -0.39 -0.18 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 6.88 7.44 -39.29 -0.29 6.59 16 30 H 0.04 0.68 7.35 -51.93 -0.38 0.30 16 31 H 0.08 1.31 7.25 -51.93 -0.38 0.93 16 32 H 0.14 1.56 8.03 -52.49 -0.42 1.14 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -27.02 301.76 -8.55 -35.57 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.16 Total: 2.81 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.60 Total: -16.73 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.03 Total: -38.37 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.39 Total: -2.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.02 -8.55 -35.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.676 kcal (2) G-P(sol) polarization free energy of solvation -27.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds