Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 H 1.08994 * 109.47213 * 177.96834 * 3 2 1 5 5 C 1.50702 * 109.47041 * 57.97000 * 3 2 1 6 6 H 1.07994 * 119.99994 * 240.00293 * 5 3 2 7 7 C 1.37880 * 120.00051 * 59.99877 * 5 3 2 8 8 N 1.31513 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00078 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47320 * 60.00091 * 9 7 5 11 11 H 1.48498 * 109.47445 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47234 * 299.99996 * 9 7 5 13 13 N 1.46894 * 109.46997 * 297.97051 * 3 2 1 14 14 C 1.46896 * 111.00216 * 273.74830 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.81668 * 14 13 3 16 16 C 1.38249 * 119.97683 * 259.72406 * 15 14 13 17 17 C 1.38180 * 120.03778 * 179.72281 * 16 15 14 18 18 C 1.38489 * 120.00114 * 0.55325 * 17 16 15 19 19 F 1.35095 * 120.02371 * 179.74875 * 18 17 16 20 20 C 1.38420 * 119.96307 * 359.71946 * 18 17 16 21 21 C 1.38339 * 119.95715 * 0.02562 * 20 18 17 22 22 Cl 1.73600 * 119.99848 * 179.97438 * 21 20 18 23 23 H 1.08995 * 109.47419 * 174.45326 * 1 2 3 24 24 H 1.08997 * 109.47238 * 54.44218 * 1 2 3 25 25 H 1.09005 * 109.46792 * 294.44871 * 1 2 3 26 26 H 1.09001 * 109.47015 * 120.00083 * 2 1 3 27 27 H 1.09004 * 109.46986 * 240.00116 * 2 1 3 28 28 H 0.96998 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.00908 * 111.00279 * 149.79279 * 13 3 2 30 30 H 1.09006 * 109.46730 * 294.81168 * 14 13 3 31 31 H 1.08996 * 109.47238 * 54.80630 * 14 13 3 32 32 H 1.07997 * 119.98073 * 359.97438 * 16 15 14 33 33 H 1.07996 * 120.00224 * 180.27327 * 17 16 15 34 34 H 1.07997 * 120.02657 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4971 2.1673 1.2045 6 1 0.8800 3.0440 1.0744 7 6 1.7880 1.7111 2.4727 8 7 2.5390 0.6432 2.6312 9 14 1.1144 2.6091 3.9658 10 1 -0.3698 2.6082 3.9160 11 1 1.5680 1.9232 5.2023 12 1 1.6089 4.0093 3.9660 13 7 1.5909 2.1207 -1.2232 14 6 2.5280 1.8858 -2.3298 15 6 1.9724 2.4873 -3.5949 16 6 1.3465 1.6802 -4.5266 17 6 0.8315 2.2313 -5.6844 18 6 0.9523 3.5911 -5.9173 19 9 0.4534 4.1296 -7.0514 20 6 1.5839 4.3985 -4.9870 21 6 2.0942 3.8458 -3.8260 22 17 2.8871 4.8572 -2.6589 23 1 -0.3634 -1.0228 -0.0993 24 1 -0.3633 0.5976 -0.8360 25 1 -0.3633 0.4254 0.9356 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.7440 0.3224 3.5233 29 1 1.4615 3.1084 -1.0624 30 1 3.4872 2.3490 -2.0981 31 1 2.6662 0.8134 -2.4674 32 1 1.2564 0.6190 -4.3476 33 1 0.3388 1.6010 -6.4098 34 1 1.6782 5.4591 -5.1674 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135040217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -51.157869 kcal Electronic energy + Delta-G solvation = -18352.258677 eV Core-core repulsion = 15224.296339 eV Total energy + Delta-G solvation = -3127.962338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.96033 -40.40654 -37.94779 -37.47184 -34.80724 -33.00370 -31.99742 -31.09848 -28.26389 -25.83376 -24.91770 -24.11770 -22.47905 -20.87859 -18.87505 -18.44634 -17.73585 -16.92289 -16.67577 -16.50171 -15.85651 -15.70644 -15.41060 -14.99225 -14.70684 -14.63280 -14.13980 -13.87893 -13.73788 -13.12437 -12.95798 -12.76478 -12.52818 -12.38410 -12.31866 -12.27779 -11.97762 -11.87779 -11.54677 -11.24563 -10.77496 -10.51057 -10.00616 -9.62947 -8.98269 -8.07293 -6.18446 -0.04222 0.07405 1.03831 1.43357 1.44363 1.51264 2.38432 2.45974 3.19810 3.21894 3.63452 3.68423 3.92881 3.99611 4.12579 4.45344 4.58691 4.68008 4.80752 4.85220 4.89726 4.92830 5.00332 5.09807 5.34852 5.38376 5.43565 5.60659 5.72596 5.74215 5.86740 5.94235 6.31857 6.49220 6.79457 7.03422 7.49751 8.97378 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.004941 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.147329 B = 5665.896406 C = 6236.372997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.223 3.777 4 H -0.033 1.033 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.095 3.905 15 C -0.078 4.078 16 C -0.062 4.062 17 C -0.138 4.138 18 C 0.098 3.902 19 F -0.137 7.137 20 C -0.148 4.148 21 C -0.017 4.017 22 Cl -0.064 7.064 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 3.582 -16.081 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.015 1.015 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.302 5.302 14 C -0.034 4.034 15 C -0.079 4.079 16 C -0.081 4.081 17 C -0.156 4.156 18 C 0.078 3.922 19 F -0.116 7.116 20 C -0.168 4.168 21 C -0.045 4.045 22 Cl -0.035 7.035 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.111 3.064 -16.044 16.469 hybrid contribution 0.699 1.253 1.338 1.962 sum -1.411 4.317 -14.705 15.391 Atomic orbital electron populations 1.21300 0.96120 0.98461 1.00552 1.21304 0.96189 0.97393 0.98688 1.18918 0.91183 0.92383 0.86043 1.01528 1.21385 1.31434 1.11892 0.91441 0.92914 1.25535 0.95374 0.95667 1.01253 1.69997 1.38332 1.24161 1.22839 0.85759 0.78934 0.78724 0.79102 1.19769 1.21128 1.20043 1.60710 1.47089 1.16207 1.06224 1.20872 0.93404 1.00524 0.88574 1.19909 0.99411 0.91657 0.96959 1.21104 0.94294 1.01274 0.91381 1.21494 1.01598 0.93103 0.99424 1.17533 0.98774 0.92236 0.83665 1.91507 1.85376 1.86619 1.48085 1.21016 1.00992 1.01869 0.92893 1.20644 1.00424 0.91327 0.92082 1.98397 1.78580 1.68299 1.58206 0.94612 0.92635 0.95412 0.92568 0.95397 0.93057 0.85209 0.95368 0.89957 0.82235 0.81381 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.46 71.98 0.68 -3.89 16 2 C -0.10 -4.53 5.58 30.60 0.17 -4.36 16 3 C 0.22 10.86 2.30 44.17 0.10 10.97 16 4 H -0.03 -1.80 7.84 -2.39 -0.02 -1.82 16 5 C -0.52 -27.85 7.34 25.60 0.19 -27.66 16 6 H 0.05 2.80 7.60 -2.91 -0.02 2.78 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -51.59 11.34 21.45 0.24 -51.34 16 9 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.67 -27.09 5.50 -499.48 -2.74 -29.84 16 14 C 0.10 3.20 5.02 85.56 0.43 3.63 16 15 C -0.08 -2.16 5.44 -19.84 -0.11 -2.27 16 16 C -0.06 -1.37 9.66 22.26 0.22 -1.15 16 17 C -0.14 -2.63 10.03 22.32 0.22 -2.41 16 18 C 0.10 2.11 7.30 22.37 0.16 2.27 16 19 F -0.14 -2.95 17.27 44.97 0.78 -2.18 16 20 C -0.15 -3.42 9.81 22.34 0.22 -3.20 16 21 C -0.02 -0.47 6.31 22.32 0.14 -0.33 16 22 Cl -0.06 -1.85 26.74 -2.72 -0.07 -1.92 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 2.26 7.50 -2.39 -0.02 2.24 16 25 H 0.03 1.29 7.37 -2.38 -0.02 1.27 16 26 H 0.06 2.98 6.12 -2.39 -0.01 2.96 16 27 H 0.03 1.17 7.43 -2.39 -0.02 1.15 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.33 13.68 7.44 -89.69 -0.67 13.01 16 30 H 0.03 1.01 7.35 -2.38 -0.02 0.99 16 31 H 0.08 2.67 7.25 -2.39 -0.02 2.65 16 32 H 0.16 2.96 8.03 -2.91 -0.02 2.94 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -57.52 301.76 3.55 -53.97 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.45 Total: 12.90 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 2.87 Total: -26.81 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.50 Total: -81.18 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -57.52 3.55 -53.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.812 kcal (2) G-P(sol) polarization free energy of solvation -57.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds