Wall clock time and date at job start Mon Mar 30 2020 01:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.50692 * 109.47614 * 239.99901 * 2 1 3 5 5 H 1.08008 * 120.00197 * 240.00153 * 4 2 1 6 6 C 1.37875 * 120.00269 * 60.00126 * 4 2 1 7 7 N 1.31521 * 119.99689 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00567 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46672 * 59.99894 * 8 6 4 10 10 H 1.48499 * 109.47370 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46938 * 300.00249 * 8 6 4 12 12 N 1.46903 * 109.46791 * 119.99979 * 2 1 3 13 13 C 1.46898 * 111.00452 * 58.95550 * 12 2 1 14 14 C 1.46904 * 110.99975 * 295.00105 * 12 2 1 15 15 C 1.50696 * 109.47127 * 190.00144 * 14 12 2 16 16 C 1.38269 * 119.97723 * 90.00341 * 15 14 12 17 17 C 1.38217 * 120.06238 * 180.27942 * 16 15 14 18 18 C 1.38320 * 120.00911 * 359.48397 * 17 16 15 19 19 Cl 1.73605 * 120.02290 * 180.25983 * 18 17 16 20 20 C 1.38543 * 119.95530 * 0.51506 * 18 17 16 21 21 F 1.35103 * 120.03554 * 179.77035 * 20 18 17 22 22 C 1.38202 * 119.97438 * 270.02373 * 15 14 12 23 23 H 1.08990 * 109.47464 * 300.00207 * 1 2 3 24 24 H 1.09003 * 109.47278 * 60.00269 * 1 2 3 25 25 H 1.09005 * 109.46815 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99838 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46924 * 296.05289 * 13 12 2 28 28 H 1.09003 * 109.46569 * 56.04160 * 13 12 2 29 29 H 1.08996 * 109.47335 * 176.04221 * 13 12 2 30 30 H 1.08997 * 109.46986 * 70.00435 * 14 12 2 31 31 H 1.08997 * 109.47206 * 310.00259 * 14 12 2 32 32 H 1.08002 * 119.96480 * 359.97438 * 16 15 14 33 33 H 1.08000 * 119.99052 * 179.72251 * 17 16 15 34 34 H 1.07990 * 120.00531 * 359.95251 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6995 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0076 10 1 1.8263 -0.4206 -5.2204 11 1 3.8066 -1.1209 -4.0079 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6485 0.0392 2.4181 15 6 2.3677 -0.5571 3.6006 16 6 3.6108 -0.0757 3.9678 17 6 4.2744 -0.6252 5.0485 18 6 3.6906 -1.6504 5.7705 19 17 4.5210 -2.3363 7.1322 20 6 2.4451 -2.1332 5.4032 21 9 1.8754 -3.1376 6.1044 22 6 1.7843 -1.5849 4.3170 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1612 -3.4844 27 1 0.4419 -2.0731 1.3347 28 1 1.8167 -2.5950 0.3319 29 1 1.9617 -2.5868 2.1059 30 1 0.5721 -0.0346 2.5726 31 1 1.9295 1.0870 2.3125 32 1 4.0657 0.7270 3.4065 33 1 5.2473 -0.2514 5.3315 34 1 0.8132 -1.9601 4.0299 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135501141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:36 Heat of formation + Delta-G solvation = -22.516612 kcal Electronic energy + Delta-G solvation = -18383.066575 eV Core-core repulsion = 15256.346216 eV Total energy + Delta-G solvation = -3126.720360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.95903 -39.44325 -37.22291 -36.43668 -33.05961 -31.30932 -30.67216 -28.49359 -26.80118 -25.22520 -23.86838 -22.95152 -21.37858 -19.32692 -17.41224 -16.64129 -16.50168 -16.10798 -15.81314 -15.24273 -14.40719 -14.32587 -13.87252 -13.80116 -13.28571 -12.99671 -12.80885 -12.61891 -12.07961 -11.66987 -11.55473 -11.31136 -11.12904 -11.00626 -10.99632 -10.77898 -10.68820 -10.53345 -10.07263 -9.89606 -8.99696 -8.95721 -8.57920 -8.43207 -7.27118 -6.05755 -4.09822 0.96049 1.08571 1.93655 3.30184 3.34688 3.37202 3.43327 4.03602 4.38251 4.58844 4.81006 5.07128 5.12473 5.22419 5.26970 5.53543 5.70171 5.81994 5.97648 6.02134 6.09055 6.16209 6.29985 6.55709 6.60488 6.71024 6.76341 6.83500 7.03786 7.38806 7.64631 7.76177 8.02323 8.29612 8.50296 8.95428 9.55451 11.01253 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035477 B = 0.003940 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.053540 B = 7104.619894 C = 7209.132142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.527 5.527 13 C 0.029 3.971 14 C 0.084 3.916 15 C -0.025 4.025 16 C -0.098 4.098 17 C -0.084 4.084 18 C -0.083 4.083 19 Cl -0.063 7.063 20 C 0.105 3.895 21 F -0.132 7.132 22 C -0.138 4.138 23 H 0.008 0.992 24 H 0.089 0.911 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -2.400 15.242 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.251 5.251 13 C -0.119 4.119 14 C -0.044 4.044 15 C -0.025 4.025 16 C -0.117 4.117 17 C -0.103 4.103 18 C -0.110 4.110 19 Cl -0.034 7.034 20 C 0.085 3.915 21 F -0.110 7.110 22 C -0.158 4.158 23 H 0.027 0.973 24 H 0.108 0.892 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.806 -2.391 15.197 15.848 hybrid contribution -0.673 -0.722 -0.581 1.146 sum 3.133 -3.113 14.615 15.268 Atomic orbital electron populations 1.22422 1.00775 0.99461 1.00635 1.19345 0.89818 0.94607 0.85697 0.94108 1.21059 1.30789 1.12586 0.89586 0.91934 1.24915 0.95159 0.95106 0.98994 1.69871 1.36884 1.23010 1.23591 0.86577 0.79256 0.79613 0.82061 1.20362 1.21378 1.20195 1.62431 1.59415 1.02012 1.01229 1.22329 0.96801 0.91109 1.01679 1.21110 0.96433 0.98326 0.88544 1.20027 0.94265 0.93393 0.94863 1.21143 0.94140 1.00649 0.95765 1.20956 1.00265 0.94349 0.94718 1.20917 0.94090 1.00944 0.95075 1.98364 1.77805 1.84271 1.42983 1.17358 0.91610 0.89170 0.93339 1.91516 1.84309 1.57688 1.77529 1.21093 1.01719 0.98233 0.94724 0.97337 0.89237 0.95042 0.92899 0.96400 0.90489 0.93758 0.94055 0.89898 0.84060 0.84189 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.27 37.16 0.31 -3.68 16 2 C 0.21 5.01 2.34 -68.87 -0.16 4.85 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.64 16 4 C -0.50 -13.19 7.88 -34.44 -0.27 -13.46 16 5 H 0.06 1.65 6.77 -52.48 -0.36 1.30 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.53 -10.53 4.73 -237.74 -1.13 -11.65 16 13 C 0.03 0.55 8.37 60.06 0.50 1.05 16 14 C 0.08 1.37 4.56 -4.98 -0.02 1.35 16 15 C -0.02 -0.35 4.88 -104.63 -0.51 -0.86 16 16 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 17 C -0.08 -0.97 9.83 -39.56 -0.39 -1.36 16 18 C -0.08 -1.05 6.33 -39.44 -0.25 -1.30 16 19 Cl -0.06 -0.74 28.62 -51.86 -1.48 -2.22 16 20 C 0.11 1.43 7.28 -39.39 -0.29 1.15 16 21 F -0.13 -1.85 16.84 2.25 0.04 -1.81 16 22 C -0.14 -1.88 7.94 -39.52 -0.31 -2.20 16 23 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 24 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 25 H 0.03 0.70 6.48 -51.93 -0.34 0.37 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.02 0.33 6.51 -51.93 -0.34 -0.01 16 28 H 0.08 1.58 6.41 -51.93 -0.33 1.24 16 29 H 0.04 0.74 6.16 -51.93 -0.32 0.42 16 30 H 0.04 0.67 6.88 -51.93 -0.36 0.31 16 31 H 0.08 1.31 7.94 -51.93 -0.41 0.90 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.81 8.03 -52.49 -0.42 1.38 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -27.00 295.51 -8.32 -35.32 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.94 Total: -1.28 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.87 Total: -14.58 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.50 Total: -35.70 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.22 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.00 -8.32 -35.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135501141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.807 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds