Wall clock time and date at job start Mon Mar 30 2020 01:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.50692 * 109.47614 * 239.99901 * 2 1 3 5 5 H 1.08008 * 120.00197 * 240.00153 * 4 2 1 6 6 C 1.37875 * 120.00269 * 60.00126 * 4 2 1 7 7 N 1.31521 * 119.99689 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00567 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46672 * 59.99894 * 8 6 4 10 10 H 1.48499 * 109.47370 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46938 * 300.00249 * 8 6 4 12 12 N 1.46903 * 109.46791 * 119.99979 * 2 1 3 13 13 C 1.46898 * 111.00452 * 58.95550 * 12 2 1 14 14 C 1.46904 * 110.99975 * 295.00105 * 12 2 1 15 15 C 1.50696 * 109.47127 * 190.00144 * 14 12 2 16 16 C 1.38269 * 119.97723 * 90.00341 * 15 14 12 17 17 C 1.38217 * 120.06238 * 180.27942 * 16 15 14 18 18 C 1.38320 * 120.00911 * 359.48397 * 17 16 15 19 19 Cl 1.73605 * 120.02290 * 180.25983 * 18 17 16 20 20 C 1.38543 * 119.95530 * 0.51506 * 18 17 16 21 21 F 1.35103 * 120.03554 * 179.77035 * 20 18 17 22 22 C 1.38202 * 119.97438 * 270.02373 * 15 14 12 23 23 H 1.08990 * 109.47464 * 300.00207 * 1 2 3 24 24 H 1.09003 * 109.47278 * 60.00269 * 1 2 3 25 25 H 1.09005 * 109.46815 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99838 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46924 * 296.05289 * 13 12 2 28 28 H 1.09003 * 109.46569 * 56.04160 * 13 12 2 29 29 H 1.08996 * 109.47335 * 176.04221 * 13 12 2 30 30 H 1.08997 * 109.46986 * 70.00435 * 14 12 2 31 31 H 1.08997 * 109.47206 * 310.00259 * 14 12 2 32 32 H 1.08002 * 119.96480 * 359.97438 * 16 15 14 33 33 H 1.08000 * 119.99052 * 179.72251 * 17 16 15 34 34 H 1.07990 * 120.00531 * 359.95251 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6995 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0076 10 1 1.8263 -0.4206 -5.2204 11 1 3.8066 -1.1209 -4.0079 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6485 0.0392 2.4181 15 6 2.3677 -0.5571 3.6006 16 6 3.6108 -0.0757 3.9678 17 6 4.2744 -0.6252 5.0485 18 6 3.6906 -1.6504 5.7705 19 17 4.5210 -2.3363 7.1322 20 6 2.4451 -2.1332 5.4032 21 9 1.8754 -3.1376 6.1044 22 6 1.7843 -1.5849 4.3170 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1612 -3.4844 27 1 0.4419 -2.0731 1.3347 28 1 1.8167 -2.5950 0.3319 29 1 1.9617 -2.5868 2.1059 30 1 0.5721 -0.0346 2.5726 31 1 1.9295 1.0870 2.3125 32 1 4.0657 0.7270 3.4065 33 1 5.2473 -0.2514 5.3315 34 1 0.8132 -1.9601 4.0299 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135501141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:35 Heat of formation + Delta-G solvation = -36.663646 kcal Electronic energy + Delta-G solvation = -18383.680037 eV Core-core repulsion = 15256.346216 eV Total energy + Delta-G solvation = -3127.333821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.01310 -40.55550 -38.65734 -37.50994 -34.86429 -32.66892 -31.69859 -30.20046 -28.19076 -27.15870 -25.36644 -23.95684 -22.64309 -20.99828 -18.52529 -18.13567 -17.69138 -17.40929 -17.07540 -16.77625 -16.09947 -15.58696 -15.33249 -14.90623 -14.63047 -14.30687 -14.15853 -13.94774 -13.49609 -13.09077 -13.01301 -12.85520 -12.63314 -12.58775 -12.35023 -12.26442 -12.17614 -11.98721 -11.92951 -11.61866 -10.90028 -10.46267 -9.98479 -9.64049 -8.86095 -8.08446 -6.18528 -0.07736 0.09113 0.96610 1.45676 1.46092 1.53627 2.37308 2.47510 3.01736 3.21394 3.48191 3.66232 3.77093 4.07276 4.19212 4.46638 4.52380 4.59873 4.70551 4.77442 4.82401 4.89053 4.91836 4.98868 5.07096 5.16662 5.20873 5.49926 5.57297 5.69094 5.73703 5.81498 6.20354 6.47257 6.72551 6.94284 7.50523 8.97188 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035477 B = 0.003940 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.053540 B = 7104.619894 C = 7209.132142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.014 0.986 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.535 5.535 13 C 0.037 3.963 14 C 0.088 3.912 15 C -0.037 4.037 16 C -0.096 4.096 17 C -0.075 4.075 18 C -0.085 4.085 19 Cl -0.054 7.054 20 C 0.093 3.907 21 F -0.137 7.137 22 C -0.139 4.139 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -2.844 16.206 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.112 4.112 14 C -0.040 4.040 15 C -0.037 4.037 16 C -0.115 4.115 17 C -0.094 4.094 18 C -0.113 4.113 19 Cl -0.025 7.025 20 C 0.073 3.927 21 F -0.115 7.115 22 C -0.158 4.158 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.701 -2.846 16.181 17.089 hybrid contribution -0.914 -0.581 -0.776 1.333 sum 3.787 -3.427 15.406 16.230 Atomic orbital electron populations 1.22225 1.00323 0.99187 1.00251 1.19088 0.90008 0.93237 0.86795 0.96772 1.21350 1.30581 1.12454 0.90916 0.92579 1.25617 0.95427 0.95775 1.01625 1.69994 1.37815 1.24125 1.24003 0.85669 0.78738 0.78653 0.78895 1.19907 1.21166 1.19857 1.62281 1.59667 1.02507 1.01421 1.22251 0.97003 0.90439 1.01479 1.21076 0.96914 0.98225 0.87752 1.19820 0.95069 0.94279 0.94582 1.21321 0.93513 1.00698 0.95977 1.21214 1.01043 0.93401 0.93697 1.21098 0.93867 1.00973 0.95313 1.98371 1.77492 1.84173 1.42492 1.17454 0.92146 0.89451 0.93604 1.91503 1.84476 1.57930 1.77630 1.21098 1.01933 0.98067 0.94750 0.95181 0.92057 0.95111 0.93023 0.96179 0.92617 0.91624 0.93879 0.89714 0.82910 0.81451 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.37 8.27 71.98 0.60 -6.78 16 2 C 0.22 10.29 2.34 44.17 0.10 10.40 16 3 H 0.01 0.76 8.03 -2.39 -0.02 0.74 16 4 C -0.51 -27.22 7.88 25.60 0.20 -27.02 16 5 H 0.06 2.98 6.77 -2.91 -0.02 2.96 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.54 -21.03 4.73 -906.07 -4.29 -25.32 16 13 C 0.04 1.34 8.37 127.69 1.07 2.41 16 14 C 0.09 2.77 4.56 85.56 0.39 3.16 16 15 C -0.04 -0.97 4.88 -19.87 -0.10 -1.07 16 16 C -0.10 -2.20 9.70 22.27 0.22 -1.98 16 17 C -0.08 -1.52 9.83 22.28 0.22 -1.30 16 18 C -0.08 -1.95 6.33 22.36 0.14 -1.81 16 19 Cl -0.05 -1.15 28.62 -2.72 -0.08 -1.23 16 20 C 0.09 2.37 7.28 22.39 0.16 2.54 16 21 F -0.14 -3.64 16.84 44.97 0.76 -2.88 16 22 C -0.14 -3.55 7.94 22.31 0.18 -3.37 16 23 H 0.03 1.20 6.75 -2.39 -0.02 1.19 16 24 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 25 H 0.03 1.37 6.48 -2.38 -0.02 1.35 16 26 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.02 0.71 6.51 -2.39 -0.02 0.70 16 28 H 0.05 2.27 6.41 -2.39 -0.02 2.25 16 29 H 0.07 2.11 6.16 -2.39 -0.01 2.09 16 30 H 0.04 1.34 6.88 -2.39 -0.02 1.32 16 31 H 0.08 2.61 7.94 -2.39 -0.02 2.59 16 32 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.14 3.50 8.03 -2.92 -0.02 3.47 16 Total: -1.00 -56.75 295.51 3.40 -53.34 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.11 Total: 6.02 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 3.63 Total: -23.62 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -4.05 Total: -76.40 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.76 Total: -2.88 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -56.75 3.40 -53.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135501141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.680 kcal (2) G-P(sol) polarization free energy of solvation -56.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds