Wall clock time and date at job start Mon Mar 30 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00334 * 2 1 4 4 H 1.48492 * 109.47003 * 269.99742 * 3 2 1 5 5 H 1.48504 * 109.46705 * 29.99960 * 3 2 1 6 6 H 1.48500 * 109.47053 * 149.99799 * 3 2 1 7 7 C 1.38801 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99744 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00083 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46927 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00088 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00041 * 180.02562 * 11 10 9 14 14 C 1.47424 * 121.25700 * 356.98789 * 13 11 10 15 15 C 1.52824 * 108.45290 * 228.05331 * 14 13 11 16 16 O 1.42942 * 109.70816 * 306.12277 * 15 14 13 17 17 C 1.43179 * 114.13864 * 64.10261 * 16 15 14 18 18 C 1.46696 * 121.26682 * 177.27153 * 13 11 10 19 19 C 1.53184 * 113.72892 * 2.96380 * 18 13 11 20 20 C 1.53885 * 86.92526 * 270.21878 * 19 18 13 21 21 C 1.53204 * 113.67540 * 264.68040 * 18 13 11 22 22 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46964 * 299.99696 * 10 9 7 24 24 H 1.09003 * 109.46964 * 60.00414 * 10 9 7 25 25 H 1.09003 * 109.71646 * 347.80232 * 14 13 11 26 26 H 1.08990 * 109.71379 * 108.44943 * 14 13 11 27 27 H 1.09004 * 109.51813 * 185.97733 * 15 14 13 28 28 H 1.09006 * 109.26301 * 66.10685 * 15 14 13 29 29 H 1.09002 * 109.56104 * 180.36872 * 17 16 15 30 30 H 1.08998 * 109.56285 * 60.02895 * 17 16 15 31 31 H 1.08998 * 113.63995 * 24.73098 * 19 18 13 32 32 H 1.09004 * 113.63703 * 155.70987 * 19 18 13 33 33 H 1.09003 * 113.60360 * 220.41663 * 20 19 18 34 34 H 1.09005 * 113.60188 * 89.55690 * 20 19 18 35 35 H 1.09001 * 113.63519 * 204.33689 * 21 18 13 36 36 H 1.08995 * 113.64050 * 335.23138 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5730 -3.2327 0.0039 12 8 6.3440 -2.2965 0.0045 13 7 6.0456 -4.4948 0.0045 14 6 5.1352 -5.6525 0.0701 15 6 5.6493 -6.6120 1.1427 16 8 7.0166 -6.9380 0.8827 17 6 7.9107 -5.8229 0.9675 18 6 7.4856 -4.7687 -0.0538 19 6 8.3541 -3.5069 -0.0405 20 6 8.2502 -3.5193 -1.5758 21 6 8.0043 -5.0348 -1.4706 22 1 -0.4850 0.8401 -0.0004 23 1 3.6432 -3.4311 0.8927 24 1 3.6439 -3.4323 -0.8874 25 1 4.1312 -5.3166 0.3295 26 1 5.1161 -6.1603 -0.8941 27 1 5.0510 -7.5231 1.1334 28 1 5.5695 -6.1354 2.1198 29 1 8.9268 -6.1525 0.7507 30 1 7.8694 -5.3974 1.9702 31 1 7.8696 -2.6477 0.4234 32 1 9.3650 -3.6760 0.3306 33 1 9.1826 -3.2623 -2.0784 34 1 7.3944 -2.9640 -1.9598 35 1 8.9180 -5.6287 -1.4971 36 1 7.2395 -5.4035 -2.1540 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152043640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:02 Heat of formation + Delta-G solvation = -52.463665 kcal Electronic energy + Delta-G solvation = -19414.892163 eV Core-core repulsion = 16412.377213 eV Total energy + Delta-G solvation = -3002.514950 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.34197 -39.36967 -38.06009 -35.66185 -34.68894 -31.06064 -30.87721 -28.45921 -27.86366 -26.69680 -24.71655 -23.17249 -21.91254 -20.02559 -19.31926 -18.24697 -17.46566 -17.13903 -16.93038 -16.75292 -16.37163 -16.19496 -15.67704 -15.46447 -14.94640 -14.72630 -14.58768 -14.27431 -13.66602 -13.39811 -13.33583 -13.04439 -12.83118 -12.69273 -12.54805 -12.08759 -12.01673 -11.87792 -11.61417 -11.33534 -11.18822 -11.06901 -10.55139 -9.92207 -9.56287 -9.01512 -8.53224 -6.24150 0.93227 1.30009 1.41980 1.45065 1.50368 1.91304 2.23090 2.64550 2.78489 2.85260 3.35658 3.57623 3.66424 3.81198 3.87205 4.00345 4.08087 4.14787 4.23113 4.36717 4.36903 4.47721 4.59805 4.78160 4.79199 4.80841 4.88838 4.99595 5.17498 5.21222 5.40023 5.68941 5.82386 6.06673 6.09584 6.21336 6.91968 7.11002 8.59230 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.005198 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.233930 B = 5385.863375 C = 5995.757869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.168 6.168 10 C -0.110 4.110 11 C 0.539 3.461 12 O -0.532 6.532 13 N -0.592 5.592 14 C 0.066 3.934 15 C 0.049 3.951 16 O -0.386 6.386 17 C 0.073 3.927 18 C 0.108 3.892 19 C -0.169 4.169 20 C -0.135 4.135 21 C -0.126 4.126 22 H 0.277 0.723 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.209 -14.827 0.819 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.059 5.941 10 C -0.260 4.260 11 C 0.328 3.672 12 O -0.411 6.411 13 N -0.326 5.326 14 C -0.056 4.056 15 C -0.028 4.028 16 O -0.305 6.305 17 C -0.005 4.005 18 C 0.022 3.978 19 C -0.206 4.206 20 C -0.172 4.172 21 C -0.165 4.165 22 H 0.087 0.913 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.152 0.848 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.208 -13.558 0.780 21.922 hybrid contribution -1.571 0.077 -0.127 1.578 sum 15.637 -13.481 0.653 20.657 Atomic orbital electron populations 1.70014 1.07314 1.29040 1.49075 1.25540 0.95237 1.02184 0.92839 0.85884 0.80730 0.79669 0.80193 1.18773 1.18317 1.15984 1.22462 0.90296 0.96683 1.58366 0.92001 1.84652 1.06384 1.05552 1.97543 1.23331 0.96068 0.99883 1.06760 1.20008 0.89359 0.82607 0.75266 1.90446 1.56771 1.43770 1.50080 1.47660 1.06742 1.05035 1.73187 1.22686 0.94364 0.86594 1.01959 1.22985 0.83089 1.00310 0.96417 1.87975 1.17543 1.33218 1.91721 1.22973 0.94979 0.85615 0.96913 1.22056 0.80074 0.97899 0.97763 1.23862 0.99657 0.99073 0.98005 1.22716 1.01165 0.96475 0.96885 1.23268 1.01859 0.96446 0.94904 0.91344 0.87171 0.87532 0.87857 0.89295 0.84753 0.92657 0.85183 0.92691 0.87446 0.88299 0.90536 0.93368 0.86670 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.97 21.65 0.30 -55.21 16 2 C 0.05 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.91 44.67 27.74 68.60 1.90 46.58 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.48 6.74 99.48 0.67 -10.81 16 7 C -0.53 -30.63 10.04 67.95 0.68 -29.95 16 8 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 9 S -0.17 -8.37 18.55 -56.49 -1.05 -9.42 16 10 C -0.11 -4.12 4.60 71.24 0.33 -3.80 16 11 C 0.54 18.57 7.23 87.66 0.63 19.21 16 12 O -0.53 -21.37 10.79 -3.03 -0.03 -21.40 16 13 N -0.59 -15.44 2.87 -772.03 -2.22 -17.66 16 14 C 0.07 1.29 6.51 86.14 0.56 1.85 16 15 C 0.05 0.80 6.90 71.92 0.50 1.29 16 16 O -0.39 -7.33 10.76 -148.98 -1.60 -8.94 16 17 C 0.07 1.30 6.19 71.92 0.45 1.74 16 18 C 0.11 2.42 1.24 3.63 0.00 2.43 16 19 C -0.17 -4.24 6.73 30.95 0.21 -4.04 16 20 C -0.13 -3.41 7.53 31.19 0.23 -3.17 16 21 C -0.13 -2.57 7.44 30.96 0.23 -2.34 16 22 H 0.28 15.52 8.31 -92.71 -0.77 14.74 16 23 H 0.11 3.81 7.52 -2.39 -0.02 3.79 16 24 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 25 H 0.10 1.93 6.17 -2.39 -0.01 1.92 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.13 1.67 7.94 -2.39 -0.02 1.65 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 3.58 4.70 -68.29 -0.32 3.26 16 32 H 0.10 1.91 8.10 -2.38 -0.02 1.89 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.56 6.92 -2.38 -0.02 1.54 16 35 H 0.12 1.72 7.96 -2.39 -0.02 1.70 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -69.94 298.19 2.33 -67.61 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.73 Total: 11.98 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 4.29 Total: -13.54 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.91 Total: -72.87 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -1.64 Total: -30.34 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.05 Total: -9.42 kcal Total: -69.94 2.33 -67.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152043640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.147 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds