Wall clock time and date at job start Mon Mar 30 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47219 * 2 1 4 4 C 1.36989 * 120.00071 * 84.85376 * 3 2 1 5 5 H 1.07998 * 120.00413 * 218.68705 * 4 3 2 6 6 C 1.38969 * 120.00029 * 38.95566 * 4 3 2 7 7 N 1.31421 * 119.99662 * 17.58090 * 6 4 3 8 8 Si 1.86802 * 120.00061 * 197.58447 * 6 4 3 9 9 H 1.48493 * 109.47263 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47231 * 120.00011 * 8 6 4 11 11 H 1.48500 * 109.46882 * 239.99841 * 8 6 4 12 12 C 1.34771 * 120.00175 * 264.85518 * 3 2 1 13 13 O 1.21641 * 120.00309 * 179.97438 * 12 3 2 14 14 C 1.47231 * 119.99923 * 359.97438 * 12 3 2 15 15 C 1.41372 * 126.44505 * 89.71261 * 14 12 3 16 16 C 1.50701 * 125.97021 * 359.97438 * 15 14 12 17 17 N 1.30402 * 108.05468 * 179.85254 * 15 14 12 18 18 N 1.39929 * 108.97642 * 0.41055 * 17 15 14 19 19 C 1.46503 * 125.74681 * 179.75368 * 18 17 15 20 20 C 1.34374 * 108.50462 * 359.73691 * 18 17 15 21 21 Cl 1.73593 * 126.32234 * 179.97438 * 20 18 17 22 22 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47190 * 300.00257 * 1 2 3 24 24 H 1.09004 * 109.46787 * 59.99893 * 1 2 3 25 25 H 1.08999 * 109.47293 * 240.00288 * 2 1 3 26 26 H 1.08997 * 109.47041 * 119.99838 * 2 1 3 27 27 H 0.96999 * 119.99555 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47223 * 89.99937 * 16 15 14 29 29 H 1.09005 * 109.47177 * 210.00263 * 16 15 14 30 30 H 1.09005 * 109.47073 * 329.99955 * 16 15 14 31 31 H 1.08998 * 109.47153 * 269.97774 * 19 18 17 32 32 H 1.08999 * 109.46856 * 29.97849 * 19 18 17 33 33 H 1.08995 * 109.46761 * 149.97177 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1464 2.0625 1.1816 5 1 1.8896 3.1103 1.2314 6 6 2.6121 1.4067 2.3148 7 7 3.2477 0.2624 2.1972 8 14 2.3345 2.1515 4.0053 9 1 1.5997 3.4344 3.8664 10 1 1.5387 1.2120 4.8356 11 1 3.6451 2.4004 4.6577 12 6 2.3417 1.9817 -1.1624 13 8 2.7468 3.1287 -1.1625 14 6 2.2047 1.2494 -2.4323 15 6 1.0566 1.2042 -3.2561 16 6 -0.2527 1.9009 -2.9886 17 7 1.3295 0.4565 -4.2890 18 7 2.6421 -0.0149 -4.1754 19 6 3.3228 -0.8906 -5.1326 20 6 3.1731 0.4711 -3.0408 21 17 4.7778 0.1764 -2.4478 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.5724 -0.1955 2.9882 28 1 -0.2335 2.8946 -3.4361 29 1 -1.0676 1.3222 -3.4236 30 1 -0.4039 1.9896 -1.9128 31 1 3.1519 -1.9315 -4.8580 32 1 2.9305 -0.7096 -6.1333 33 1 4.3926 -0.6820 -5.1186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154981907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:48 Heat of formation + Delta-G solvation = 21.919980 kcal Electronic energy + Delta-G solvation = -19428.030501 eV Core-core repulsion = 16323.157018 eV Total energy + Delta-G solvation = -3104.873483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.48053 -39.97683 -38.02598 -36.82592 -35.10980 -33.85189 -31.51341 -31.13891 -30.37255 -27.60793 -26.27941 -24.13007 -23.04912 -21.52879 -20.53673 -18.83549 -18.23537 -17.49410 -16.86957 -16.70310 -16.11354 -15.93633 -14.99078 -14.78441 -14.75565 -14.28272 -14.18690 -13.67476 -13.61323 -13.55709 -13.30220 -13.21157 -12.82657 -12.75214 -12.73434 -12.57448 -12.29292 -12.00703 -11.80208 -11.68356 -10.96410 -10.52359 -10.25701 -9.55688 -9.37463 -8.25614 -6.05151 0.26285 0.37600 1.30430 1.39713 1.45753 1.57647 1.60727 1.96057 2.34713 3.03881 3.11018 3.43700 3.82620 4.15776 4.24974 4.33410 4.36978 4.44683 4.58059 4.66534 4.70449 4.75394 4.88363 4.91423 5.10042 5.32494 5.36359 5.50653 5.59938 5.66004 6.27556 6.37513 6.59316 7.20482 7.47748 8.10660 8.74584 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.007300 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.967151 B = 3834.580360 C = 4332.304475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.102 3.898 3 N -0.430 5.430 4 C -0.338 4.338 5 H 0.067 0.933 6 C 0.006 3.994 7 N -0.887 5.887 8 Si 0.982 3.018 9 H -0.269 1.269 10 H -0.264 1.264 11 H -0.281 1.281 12 C 0.530 3.470 13 O -0.625 6.625 14 C -0.251 4.251 15 C 0.105 3.895 16 C -0.076 4.076 17 N -0.280 5.280 18 N -0.351 5.351 19 C 0.083 3.917 20 C 0.140 3.860 21 Cl 0.013 6.987 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.273 0.727 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -6.857 -10.612 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.147 5.147 4 C -0.466 4.466 5 H 0.085 0.915 6 C -0.196 4.196 7 N -0.524 5.524 8 Si 0.806 3.194 9 H -0.193 1.193 10 H -0.189 1.189 11 H -0.207 1.207 12 C 0.317 3.683 13 O -0.511 6.511 14 C -0.268 4.268 15 C -0.060 4.060 16 C -0.134 4.134 17 N -0.104 5.104 18 N -0.134 5.134 19 C -0.055 4.055 20 C -0.017 4.017 21 Cl 0.041 6.959 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.098 -7.099 -11.603 13.951 hybrid contribution 0.947 0.590 1.627 1.973 sum -2.151 -6.509 -9.977 12.105 Atomic orbital electron populations 1.22133 0.95324 1.02066 1.01798 1.21549 0.94428 0.83759 1.02412 1.43563 1.54352 1.12682 1.04130 1.19430 1.44550 0.95926 0.86652 0.91494 1.26131 0.93567 0.96816 1.03112 1.69934 1.33689 1.17591 1.31235 0.85053 0.78104 0.78723 0.77528 1.19339 1.18882 1.20655 1.17707 0.80442 0.86447 0.83667 1.90562 1.52103 1.20662 1.87817 1.20047 0.95784 1.09744 1.01176 1.22597 0.96526 0.96172 0.90735 1.20427 0.89746 1.00200 1.03012 1.77062 0.93218 1.17994 1.22125 1.48628 1.09753 1.38510 1.16522 1.22451 0.97647 0.93174 0.92255 1.21930 0.89194 0.99594 0.90977 1.98417 1.16789 1.94757 1.85969 0.90576 0.93304 0.92357 0.93574 0.89115 0.91751 0.89184 0.87530 0.90922 0.88114 0.86423 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 10.21 71.98 0.73 -5.02 16 2 C 0.10 4.64 5.67 86.38 0.49 5.13 16 3 N -0.43 -22.68 2.52 -639.44 -1.61 -24.29 16 4 C -0.34 -19.22 8.87 84.06 0.75 -18.48 16 5 H 0.07 4.05 7.77 -2.91 -0.02 4.02 16 6 C 0.01 0.34 5.09 84.93 0.43 0.77 16 7 N -0.89 -47.76 11.26 21.67 0.24 -47.52 16 8 Si 0.98 42.26 29.59 68.60 2.03 44.29 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 12 C 0.53 28.00 7.01 86.61 0.61 28.60 16 13 O -0.62 -38.23 16.99 -4.16 -0.07 -38.30 16 14 C -0.25 -10.89 4.05 -20.12 -0.08 -10.97 16 15 C 0.11 3.83 7.17 43.54 0.31 4.14 16 16 C -0.08 -2.24 9.67 71.24 0.69 -1.55 16 17 N -0.28 -9.22 12.49 -46.64 -0.58 -9.80 16 18 N -0.35 -10.75 3.98 -357.34 -1.42 -12.17 16 19 C 0.08 1.51 11.28 127.77 1.44 2.96 16 20 C 0.14 5.29 7.21 84.33 0.61 5.90 16 21 Cl 0.01 0.45 28.57 -2.72 -0.08 0.38 16 22 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 2.01 5.34 -2.38 -0.01 2.00 16 25 H 0.05 2.03 6.44 -2.39 -0.02 2.01 16 26 H 0.09 4.53 5.43 -2.39 -0.01 4.52 16 27 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.07 2.37 6.12 -2.38 -0.01 2.35 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.59 7.78 -2.39 -0.02 1.57 16 Total: -1.00 -72.11 298.97 5.62 -66.49 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.14 Total: 9.45 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.98 Total: 11.47 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.37 Total: -93.79 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.07 Total: -38.30 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.38 kcal Total: -72.11 5.62 -66.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154981907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.410 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds