Wall clock time and date at job start Mon Mar 30 2020 01:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47499 * 2 1 4 4 C 1.46895 * 111.00323 * 199.52206 * 3 2 1 5 5 C 1.50696 * 109.47462 * 66.03668 * 4 3 2 6 6 H 1.07999 * 120.00188 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00246 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00077 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47430 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47120 * 119.99934 * 9 7 5 12 12 H 1.48500 * 109.47306 * 239.99989 * 9 7 5 13 13 C 1.38590 * 111.00415 * 75.55768 * 3 2 1 14 14 N 1.32942 * 120.49558 * 58.71540 * 13 3 2 15 15 C 1.32263 * 120.63913 * 179.71460 * 14 13 3 16 16 O 1.35481 * 119.14448 * 180.28333 * 15 14 13 17 17 C 1.42894 * 117.00197 * 180.27707 * 16 15 14 18 18 N 1.32295 * 121.71626 * 0.57117 * 15 14 13 19 19 C 1.32532 * 120.95382 * 359.71308 * 18 15 14 20 20 C 1.38184 * 119.25829 * 0.02562 * 19 18 15 21 21 Cl 1.73606 * 120.78503 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47180 * 184.87231 * 1 2 3 23 23 H 1.09000 * 109.47415 * 304.87340 * 1 2 3 24 24 H 1.08999 * 109.46474 * 64.87531 * 1 2 3 25 25 H 1.08999 * 109.47645 * 239.99435 * 2 1 3 26 26 H 1.09010 * 109.46957 * 119.99227 * 2 1 3 27 27 H 1.08994 * 109.47768 * 186.04248 * 4 3 2 28 28 H 1.09006 * 109.46997 * 306.04351 * 4 3 2 29 29 H 0.96998 * 119.99946 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46827 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47018 * 299.99875 * 17 16 15 32 32 H 1.08997 * 109.47368 * 60.00634 * 17 16 15 33 33 H 1.08006 * 120.37225 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4138 1.4504 -0.4583 5 6 3.4858 1.0446 -1.9078 6 1 2.5858 0.7663 -2.4359 7 6 4.7006 1.0285 -2.5597 8 7 5.7966 1.3669 -1.9165 9 14 4.7896 0.5261 -4.3567 10 1 3.4273 0.1950 -4.8463 11 1 5.3437 1.6474 -5.1573 12 1 5.6685 -0.6628 -4.4954 13 6 1.8811 1.9609 1.2529 14 7 2.4722 1.4193 2.3135 15 6 2.3464 1.9697 3.5095 16 8 2.9665 1.3957 4.5685 17 6 2.7949 2.0247 5.8400 18 7 1.6263 3.0631 3.6998 19 6 1.0045 3.6542 2.6896 20 6 1.1133 3.1157 1.4216 21 17 0.3149 3.8571 0.0700 22 1 -0.3633 -1.0239 0.0873 23 1 -0.3634 0.5876 0.8431 24 1 -0.3632 0.4363 -0.9305 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7854 2.4690 -0.3473 28 1 4.0248 0.7737 0.1392 29 1 6.6512 1.3560 -2.3753 30 1 3.3417 1.4651 6.5990 31 1 3.1762 3.0449 5.7951 32 1 1.7356 2.0437 6.0961 33 1 0.4187 4.5462 2.8556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157749386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:58 Heat of formation + Delta-G solvation = 24.446144 kcal Electronic energy + Delta-G solvation = -18860.839550 eV Core-core repulsion = 15756.075610 eV Total energy + Delta-G solvation = -3104.763940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15452 -38.62256 -36.86824 -36.17782 -33.23447 -32.56657 -30.89252 -29.82023 -27.52349 -26.72331 -24.27043 -23.08969 -22.56472 -20.75378 -18.40886 -17.84095 -16.53104 -16.34519 -16.09479 -15.24804 -15.02510 -14.71044 -14.24452 -13.95173 -13.57563 -13.13171 -12.51921 -12.24634 -12.05834 -12.02353 -11.46704 -11.40141 -11.12364 -10.96646 -10.89349 -10.85948 -10.70350 -10.40907 -10.33326 -9.91966 -9.41058 -9.01153 -8.54060 -8.50242 -7.82731 -6.08269 -4.10909 1.03906 1.10624 2.29728 2.75705 3.29641 3.37070 3.41483 3.78985 3.99167 4.15820 4.43558 4.76806 5.07823 5.14379 5.20673 5.28243 5.36655 5.48263 5.70492 5.78670 5.87276 6.04897 6.31800 6.57575 6.70315 6.81260 7.07564 7.13169 7.25814 7.67283 7.78218 8.00103 8.19042 8.34818 8.94943 9.52870 11.02691 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.006183 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.817389 B = 4527.582762 C = 5117.835327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.480 5.480 4 C 0.202 3.798 5 C -0.510 4.510 6 H 0.069 0.931 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.420 3.580 14 N -0.538 5.538 15 C 0.507 3.493 16 O -0.290 6.290 17 C 0.046 3.954 18 N -0.572 5.572 19 C 0.190 3.810 20 C -0.163 4.163 21 Cl -0.025 7.025 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.013 0.987 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 3.050 10.786 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 N -0.205 5.205 4 C 0.080 3.920 5 C -0.549 4.549 6 H 0.087 0.913 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.182 3.818 14 N -0.268 5.268 15 C 0.203 3.797 16 O -0.191 6.191 17 C -0.050 4.050 18 N -0.303 5.303 19 C 0.026 3.974 20 C -0.197 4.197 21 Cl 0.004 6.996 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.782 2.707 11.175 15.096 hybrid contribution 0.220 0.042 -1.002 1.027 sum -9.562 2.749 10.173 14.229 Atomic orbital electron populations 1.21783 0.96084 1.00469 1.01773 1.22140 0.94387 0.87561 1.03013 1.60655 1.27095 1.19586 1.13132 1.19854 0.78331 0.97711 0.96128 1.21078 0.93666 1.45458 0.94669 0.91282 1.24976 0.95466 0.95349 0.98589 1.69980 0.98535 1.48111 1.36693 0.86387 0.78193 0.78099 0.84432 1.19499 1.20982 1.21037 1.20328 0.84340 0.88217 0.88953 1.68047 1.25288 1.35689 0.97746 1.20635 0.87081 0.85493 0.86527 1.86124 1.66674 1.50839 1.15440 1.22956 1.02600 0.98811 0.80662 1.68110 1.14721 1.11997 1.35480 1.22739 0.92363 0.96857 0.85435 1.22362 1.05547 0.99843 0.91920 1.98360 1.77303 1.80468 1.43481 0.92802 0.94277 0.91779 0.88180 0.93808 0.95202 0.96904 0.92795 0.88099 0.91937 0.92053 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.07 37.16 0.37 -1.93 16 2 C 0.06 1.09 5.49 -3.83 -0.02 1.07 16 3 N -0.48 -10.43 3.91 -174.36 -0.68 -11.11 16 4 C 0.20 5.29 4.55 -4.98 -0.02 5.27 16 5 C -0.51 -13.93 8.23 -34.44 -0.28 -14.22 16 6 H 0.07 1.84 7.31 -52.49 -0.38 1.46 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.42 8.45 4.57 -154.74 -0.71 7.75 16 14 N -0.54 -11.11 9.62 -13.93 -0.13 -11.24 16 15 C 0.51 9.15 8.49 -91.32 -0.77 8.37 16 16 O -0.29 -4.73 10.56 -18.14 -0.19 -4.92 16 17 C 0.05 0.49 10.36 101.05 1.05 1.54 16 18 N -0.57 -8.95 9.22 -14.80 -0.14 -9.09 16 19 C 0.19 2.73 11.10 -17.27 -0.19 2.54 16 20 C -0.16 -2.76 6.38 -39.05 -0.25 -3.01 16 21 Cl -0.02 -0.39 28.57 -51.86 -1.48 -1.87 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.62 7.60 -51.93 -0.39 0.23 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.10 2.07 6.58 -51.93 -0.34 1.73 16 26 H 0.04 0.88 7.43 -51.92 -0.39 0.50 16 27 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 28 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.18 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -30.92 302.78 -7.28 -38.21 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -4.01 Total: -4.01 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.93 Total: 8.90 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.22 Total: -57.12 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.19 Total: -4.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.92 -7.28 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157749386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.651 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds