Wall clock time and date at job start Mon Mar 30 2020 01:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47418 * 2 1 4 4 N 1.29021 * 124.91532 * 89.99930 * 3 2 1 5 5 C 1.31779 * 117.12607 * 180.02562 * 4 3 2 6 6 C 1.50705 * 122.75235 * 179.97438 * 5 4 3 7 7 S 1.81405 * 109.46754 * 90.02347 * 6 5 4 8 8 C 1.81399 * 102.99706 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47162 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46974 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99861 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00187 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99983 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46948 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47174 * 119.99840 * 15 13 11 18 18 H 1.48497 * 109.47378 * 239.99755 * 15 13 11 19 19 C 1.33637 * 114.49910 * 0.22746 * 5 4 3 20 20 S 1.70969 * 124.91621 * 270.00001 * 3 2 1 21 21 H 1.09002 * 109.46627 * 60.00177 * 1 2 3 22 22 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.46898 * 300.00318 * 1 2 3 24 24 H 1.09007 * 109.47221 * 239.99947 * 2 1 3 25 25 H 1.09004 * 109.47061 * 120.00456 * 2 1 3 26 26 H 1.09000 * 109.47022 * 330.02620 * 6 5 4 27 27 H 1.08998 * 109.46894 * 210.02175 * 6 5 4 28 28 H 1.09004 * 109.47089 * 299.99939 * 8 7 6 29 29 H 1.09004 * 109.47568 * 59.99949 * 8 7 6 30 30 H 1.09000 * 109.46497 * 299.99702 * 9 8 7 31 31 H 1.08996 * 109.46876 * 60.00092 * 9 8 7 32 32 H 1.08993 * 109.46955 * 300.00073 * 10 9 8 33 33 H 1.09000 * 109.47050 * 59.99902 * 10 9 8 34 34 H 0.97002 * 120.00081 * 179.97438 * 14 13 11 35 35 H 1.08002 * 126.03681 * 179.76428 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7134 3.3482 0.8794 6 6 3.0393 4.2719 2.0246 7 16 4.7830 4.0735 2.4839 8 6 4.9799 5.2458 3.8542 9 6 6.4223 5.1987 4.3624 10 6 6.5885 6.1880 5.5178 11 6 8.0090 6.1411 6.0187 12 1 8.7218 5.4724 5.5593 13 6 8.3983 6.9513 7.0642 14 7 7.5302 7.7652 7.6239 15 14 10.1590 6.8927 7.6856 16 1 10.9310 5.9024 6.8928 17 1 10.7798 8.2340 7.5410 18 1 10.1660 6.4958 9.1165 19 6 2.8365 3.7122 -0.4006 20 16 2.3586 2.3434 -1.4019 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.4084 4.0277 2.8793 27 1 2.8583 5.3034 1.7222 28 1 4.7502 6.2530 3.5065 29 1 4.3004 4.9769 4.6630 30 1 6.6523 4.1915 4.7100 31 1 7.1014 5.4680 3.5535 32 1 6.3585 7.1949 5.1698 33 1 5.9092 5.9192 6.3268 34 1 7.8040 8.3349 8.3597 35 1 3.1716 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161464586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:17 Heat of formation + Delta-G solvation = 12.494653 kcal Electronic energy + Delta-G solvation = -15108.662497 eV Core-core repulsion = 12551.717222 eV Total energy + Delta-G solvation = -2556.945275 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10311 -34.65458 -34.43718 -32.01462 -31.19552 -28.04161 -27.36751 -25.62535 -23.42573 -22.14618 -20.30405 -19.89960 -17.92442 -16.47809 -15.99821 -15.59227 -15.12234 -14.81431 -14.61903 -14.50791 -13.93636 -13.60182 -13.27971 -13.18451 -12.52577 -12.48857 -12.03730 -11.88758 -11.68891 -11.48743 -11.47216 -10.89569 -10.88915 -10.51428 -9.88156 -9.82749 -9.78439 -9.61725 -9.30498 -9.10561 -8.82284 -8.36652 -7.41224 -6.01411 -4.03723 0.44316 1.12098 1.47380 1.69748 2.77496 2.96781 3.31491 3.38869 3.43860 3.73219 4.46017 4.49838 4.73045 4.83139 4.84431 5.00707 5.20811 5.32769 5.34678 5.43178 5.49411 5.52370 5.61837 5.65002 5.77331 5.92413 6.14114 6.56690 6.72957 7.02825 7.54752 7.64308 7.76369 7.97820 8.39812 9.02988 9.60534 11.10014 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.048631 B = 0.002634 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.621050 B =10628.572856 C =10722.479580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.054 3.946 4 N -0.459 5.459 5 C 0.090 3.910 6 C -0.018 4.018 7 S -0.260 6.260 8 C -0.075 4.075 9 C -0.094 4.094 10 C 0.027 3.973 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.241 4.241 20 S 0.114 5.886 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 -12.151 -18.998 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.226 4.226 4 N -0.173 5.173 5 C -0.042 4.042 6 C -0.169 4.169 7 S -0.031 6.031 8 C -0.223 4.223 9 C -0.133 4.133 10 C -0.012 4.012 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.383 4.383 20 S 0.369 5.631 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.605 -13.122 -19.870 27.934 hybrid contribution 0.276 1.575 1.669 2.311 sum -14.329 -11.548 -18.201 25.883 Atomic orbital electron populations 1.21766 0.93462 1.02592 1.02672 1.20239 0.96723 0.87462 1.04437 1.27059 1.02887 1.01851 0.90755 1.66017 1.14261 1.05406 1.31604 1.19421 1.00577 0.91134 0.93065 1.21737 0.97857 0.99365 0.97896 1.87088 1.10640 1.58873 1.46501 1.23670 1.03937 0.98509 0.96162 1.21464 0.90248 1.01750 0.99876 1.19110 0.97127 0.93381 0.91551 1.21262 0.95861 1.22279 1.16365 0.92490 1.25024 0.97512 0.95378 0.96580 1.69971 1.34225 1.24860 1.24494 0.86515 0.84866 0.77853 0.78673 1.19675 1.20993 1.20976 1.26812 1.11336 1.04571 0.95593 1.83885 1.60752 1.05509 1.12929 0.92444 0.91331 0.91880 0.89608 0.88569 0.88465 0.88621 0.90460 0.90405 0.92356 0.92401 0.96410 0.96389 0.93024 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.05 -0.35 6.52 -27.88 -0.18 -0.53 16 3 C 0.05 0.56 6.64 -13.46 -0.09 0.47 16 4 N -0.46 -6.13 10.53 -8.06 -0.08 -6.21 16 5 C 0.09 1.17 6.00 -84.22 -0.51 0.66 16 6 C -0.02 -0.24 6.37 36.01 0.23 -0.01 16 7 S -0.26 -4.26 21.72 -107.50 -2.33 -6.59 16 8 C -0.07 -1.32 5.94 37.16 0.22 -1.10 16 9 C -0.09 -2.00 5.16 -26.73 -0.14 -2.14 16 10 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 11 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.24 -2.61 11.13 29.12 0.32 -2.28 16 20 S 0.11 1.03 23.18 -107.50 -2.49 -1.46 16 21 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.10 1.07 8.12 -51.92 -0.42 0.65 16 28 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.08 1.34 8.14 -51.92 -0.42 0.91 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 35 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -31.75 326.70 -10.05 -41.80 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -5.46 Total: -4.44 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -0.32 Total: -18.56 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.65 Total: -32.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -4.83 Total: -8.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.75 -10.05 -41.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161464586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.298 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds