Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 H 1.09003 * 109.46714 * 177.97018 * 3 2 1 5 5 C 1.50693 * 109.47408 * 57.96325 * 3 2 1 6 6 H 1.08006 * 119.99949 * 240.00326 * 5 3 2 7 7 C 1.37881 * 120.00194 * 59.99985 * 5 3 2 8 8 N 1.31517 * 119.99760 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00212 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47271 * 90.00046 * 9 7 5 11 11 H 1.48498 * 109.47019 * 210.00136 * 9 7 5 12 12 H 1.48504 * 109.47045 * 329.99844 * 9 7 5 13 13 N 1.46899 * 109.46568 * 297.96095 * 3 2 1 14 14 C 1.46896 * 111.00501 * 273.75532 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.76793 * 14 13 3 16 16 C 1.38233 * 119.99418 * 259.72800 * 15 14 13 17 17 C 1.38204 * 120.03605 * 179.72937 * 16 15 14 18 18 C 1.38387 * 120.03771 * 0.53903 * 17 16 15 19 19 Cl 1.73596 * 120.00126 * 179.75486 * 18 17 16 20 20 C 1.38296 * 119.99856 * 359.73342 * 18 17 16 21 21 C 1.38441 * 120.00526 * 79.99546 * 15 14 13 22 22 F 1.35103 * 120.01781 * 0.02663 * 21 15 14 23 23 H 1.09008 * 109.46630 * 174.45273 * 1 2 3 24 24 H 1.08997 * 109.46751 * 54.45845 * 1 2 3 25 25 H 1.08995 * 109.46924 * 294.45295 * 1 2 3 26 26 H 1.09006 * 109.47080 * 119.99828 * 2 1 3 27 27 H 1.08995 * 109.47295 * 239.99192 * 2 1 3 28 28 H 0.96996 * 120.00151 * 180.02562 * 8 7 5 29 29 H 1.00904 * 110.99562 * 149.80246 * 13 3 2 30 30 H 1.09006 * 109.46730 * 294.76292 * 14 13 3 31 31 H 1.08996 * 109.47238 * 54.75755 * 14 13 3 32 32 H 1.07997 * 119.98097 * 359.97143 * 16 15 14 33 33 H 1.07998 * 119.98386 * 180.25208 * 17 16 15 34 34 H 1.08004 * 120.02099 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0364 5 6 1.4969 2.1674 1.2044 6 1 0.8798 3.0441 1.0741 7 6 1.7878 1.7113 2.4726 8 7 2.5396 0.6439 2.6313 9 14 1.1140 2.6094 3.9655 10 1 -0.2069 2.0384 4.3322 11 1 2.0545 2.4522 5.1039 12 1 0.9588 4.0516 3.6472 13 7 1.5909 2.1205 -1.2233 14 6 2.5281 1.8855 -2.3299 15 6 1.9719 2.4858 -3.5953 16 6 1.3464 1.6781 -4.5266 17 6 0.8311 2.2286 -5.6848 18 6 0.9507 3.5873 -5.9188 19 17 0.3087 4.2768 -7.3769 20 6 1.5812 4.3959 -4.9907 21 6 2.0924 3.8452 -3.8278 22 9 2.7089 4.6340 -2.9206 23 1 -0.3633 -1.0230 -0.0994 24 1 -0.3633 0.5974 -0.8362 25 1 -0.3633 0.4254 0.9355 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 2.7439 0.3229 3.5234 29 1 1.4617 3.1082 -1.0626 30 1 3.4870 2.3494 -2.0986 31 1 2.6669 0.8131 -2.4669 32 1 1.2569 0.6169 -4.3471 33 1 0.3390 1.5974 -6.4099 34 1 1.6743 5.4564 -5.1728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162963929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -38.240140 kcal Electronic energy + Delta-G solvation = -18339.610005 eV Core-core repulsion = 15212.207822 eV Total energy + Delta-G solvation = -3127.402183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.83874 -39.24421 -36.82600 -36.13734 -33.19473 -31.34238 -30.76427 -29.75277 -26.57185 -24.41285 -23.18111 -22.95575 -21.34547 -19.05003 -17.76653 -16.77061 -16.51171 -15.72933 -15.59887 -14.89242 -14.56158 -14.14914 -13.83981 -13.62600 -13.42700 -13.21055 -12.98383 -12.35127 -12.11402 -11.72086 -11.54160 -11.38323 -11.17868 -11.06132 -10.91710 -10.70669 -10.40786 -10.12610 -9.76929 -9.40487 -9.02904 -8.83224 -8.60106 -8.47287 -7.33027 -6.03908 -4.09134 0.95375 1.05983 1.89491 3.29123 3.35854 3.38227 3.40845 4.26497 4.39427 4.61622 4.81499 4.85026 5.15739 5.27420 5.45435 5.48600 5.72972 5.87356 5.96624 6.06259 6.12481 6.42573 6.49716 6.67454 6.71310 6.82643 7.19860 7.24097 7.46251 7.70819 7.76612 7.80630 8.20375 8.31961 8.59678 8.98535 9.55634 11.02216 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.004168 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.569942 B = 6716.514330 C = 7081.473820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.093 3.907 15 C -0.089 4.089 16 C -0.064 4.064 17 C -0.121 4.121 18 C -0.017 4.017 19 Cl -0.069 7.069 20 C -0.149 4.149 21 C 0.116 3.884 22 F -0.129 7.129 23 H 0.013 0.987 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.010 0.990 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 3.288 -16.468 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.036 4.036 15 C -0.090 4.090 16 C -0.083 4.083 17 C -0.140 4.140 18 C -0.044 4.044 19 Cl -0.040 7.040 20 C -0.169 4.169 21 C 0.096 3.904 22 F -0.107 7.107 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.093 2.747 -16.572 16.928 hybrid contribution 0.425 1.254 1.148 1.752 sum -1.668 4.001 -15.423 16.021 Atomic orbital electron populations 1.21443 0.97459 0.97139 1.01641 1.21431 0.95137 0.98074 0.99341 1.19158 0.93449 0.91658 0.84892 0.98013 1.21163 1.31707 1.12001 0.90286 0.92296 1.24868 0.95020 0.95021 0.98838 1.69882 1.37312 1.23142 1.22432 0.86568 0.78782 0.80131 0.82373 1.20617 1.21306 1.19948 1.60791 1.46458 1.16582 1.07091 1.20862 0.94041 1.00300 0.88402 1.20301 0.99137 0.91575 0.98036 1.20936 0.95079 1.00597 0.91701 1.21082 1.01379 0.92885 0.98680 1.20514 1.01020 0.93379 0.89485 1.98367 1.85209 1.85020 1.35426 1.20884 1.01574 1.01086 0.93338 1.17378 0.96986 0.88386 0.87690 1.91540 1.80062 1.73663 1.65466 0.96834 0.93437 0.92936 0.89577 0.97162 0.92935 0.84985 0.94677 0.90090 0.83914 0.84501 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.46 37.16 0.35 -2.28 16 2 C -0.10 -2.38 5.58 -26.73 -0.15 -2.53 16 3 C 0.22 5.24 2.30 -68.87 -0.16 5.08 16 4 H 0.00 0.06 7.84 -51.93 -0.41 -0.35 16 5 C -0.51 -13.62 7.34 -34.44 -0.25 -13.88 16 6 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.82 11.34 55.43 0.63 -24.19 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.68 -13.93 5.50 -109.23 -0.60 -14.53 16 14 C 0.09 1.61 5.30 -4.98 -0.03 1.59 16 15 C -0.09 -1.31 5.44 -104.55 -0.57 -1.87 16 16 C -0.06 -0.79 9.67 -39.60 -0.38 -1.18 16 17 C -0.12 -1.33 9.83 -39.54 -0.39 -1.72 16 18 C -0.02 -0.20 6.32 -39.50 -0.25 -0.45 16 19 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 16 20 C -0.15 -1.85 9.81 -39.48 -0.39 -2.24 16 21 C 0.12 1.68 7.25 -39.43 -0.29 1.39 16 22 F -0.13 -2.06 16.66 2.25 0.04 -2.03 16 23 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 24 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 25 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 26 H 0.09 2.26 6.13 -51.93 -0.32 1.94 16 27 H 0.01 0.21 7.43 -51.93 -0.39 -0.17 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 7.01 8.24 -39.29 -0.32 6.69 16 30 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 31 H 0.08 1.35 7.25 -51.93 -0.38 0.98 16 32 H 0.14 1.55 8.03 -52.49 -0.42 1.13 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -27.20 304.81 -8.68 -35.88 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.22 Total: 2.88 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.59 Total: -16.44 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.03 Total: -38.72 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.20 -8.68 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162963929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.361 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds