Wall clock time and date at job start Mon Mar 30 2020 01:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 H 1.09003 * 109.46714 * 177.97018 * 3 2 1 5 5 C 1.50693 * 109.47408 * 57.96325 * 3 2 1 6 6 H 1.08006 * 119.99949 * 240.00326 * 5 3 2 7 7 C 1.37881 * 120.00194 * 59.99985 * 5 3 2 8 8 N 1.31517 * 119.99760 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00212 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47271 * 90.00046 * 9 7 5 11 11 H 1.48498 * 109.47019 * 210.00136 * 9 7 5 12 12 H 1.48504 * 109.47045 * 329.99844 * 9 7 5 13 13 N 1.46899 * 109.46568 * 297.96095 * 3 2 1 14 14 C 1.46896 * 111.00501 * 273.75532 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.76793 * 14 13 3 16 16 C 1.38233 * 119.99418 * 259.72800 * 15 14 13 17 17 C 1.38204 * 120.03605 * 179.72937 * 16 15 14 18 18 C 1.38387 * 120.03771 * 0.53903 * 17 16 15 19 19 Cl 1.73596 * 120.00126 * 179.75486 * 18 17 16 20 20 C 1.38296 * 119.99856 * 359.73342 * 18 17 16 21 21 C 1.38441 * 120.00526 * 79.99546 * 15 14 13 22 22 F 1.35103 * 120.01781 * 0.02663 * 21 15 14 23 23 H 1.09008 * 109.46630 * 174.45273 * 1 2 3 24 24 H 1.08997 * 109.46751 * 54.45845 * 1 2 3 25 25 H 1.08995 * 109.46924 * 294.45295 * 1 2 3 26 26 H 1.09006 * 109.47080 * 119.99828 * 2 1 3 27 27 H 1.08995 * 109.47295 * 239.99192 * 2 1 3 28 28 H 0.96996 * 120.00151 * 180.02562 * 8 7 5 29 29 H 1.00904 * 110.99562 * 149.80246 * 13 3 2 30 30 H 1.09006 * 109.46730 * 294.76292 * 14 13 3 31 31 H 1.08996 * 109.47238 * 54.75755 * 14 13 3 32 32 H 1.07997 * 119.98097 * 359.97143 * 16 15 14 33 33 H 1.07998 * 119.98386 * 180.25208 * 17 16 15 34 34 H 1.08004 * 120.02099 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0364 5 6 1.4969 2.1674 1.2044 6 1 0.8798 3.0441 1.0741 7 6 1.7878 1.7113 2.4726 8 7 2.5396 0.6439 2.6313 9 14 1.1140 2.6094 3.9655 10 1 -0.2069 2.0384 4.3322 11 1 2.0545 2.4522 5.1039 12 1 0.9588 4.0516 3.6472 13 7 1.5909 2.1205 -1.2233 14 6 2.5281 1.8855 -2.3299 15 6 1.9719 2.4858 -3.5953 16 6 1.3464 1.6781 -4.5266 17 6 0.8311 2.2286 -5.6848 18 6 0.9507 3.5873 -5.9188 19 17 0.3087 4.2768 -7.3769 20 6 1.5812 4.3959 -4.9907 21 6 2.0924 3.8452 -3.8278 22 9 2.7089 4.6340 -2.9206 23 1 -0.3633 -1.0230 -0.0994 24 1 -0.3633 0.5974 -0.8362 25 1 -0.3633 0.4254 0.9355 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 2.7439 0.3229 3.5234 29 1 1.4617 3.1082 -1.0626 30 1 3.4870 2.3494 -2.0986 31 1 2.6669 0.8131 -2.4669 32 1 1.2569 0.6169 -4.3471 33 1 0.3390 1.5974 -6.4099 34 1 1.6743 5.4564 -5.1728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162963929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:32 Heat of formation + Delta-G solvation = -52.432945 kcal Electronic energy + Delta-G solvation = -18340.225452 eV Core-core repulsion = 15212.207822 eV Total energy + Delta-G solvation = -3128.017629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.00064 -40.26846 -38.17247 -37.41382 -34.85607 -33.07664 -31.82331 -31.16927 -28.35690 -25.97326 -24.95878 -23.98907 -22.51279 -20.92294 -18.84606 -18.43187 -17.75377 -17.02464 -16.77048 -16.64893 -15.85281 -15.71728 -15.32439 -15.04059 -14.65806 -14.42982 -14.18435 -14.00136 -13.78968 -13.18182 -12.93999 -12.80348 -12.67679 -12.44233 -12.29906 -12.17630 -12.00499 -11.89025 -11.58871 -11.28463 -10.80401 -10.54361 -9.99575 -9.65032 -9.05637 -8.10237 -6.21934 -0.06151 0.08957 0.99569 1.41464 1.42920 1.51963 2.37928 2.44574 3.18882 3.23188 3.58123 3.65083 3.91548 3.94862 4.14185 4.46275 4.54484 4.63543 4.73367 4.82189 4.87439 4.96803 4.99285 5.10990 5.31283 5.34512 5.39778 5.57301 5.69299 5.71335 5.83016 5.90960 6.27961 6.42883 6.73296 6.97876 7.46483 8.94823 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.004168 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.569942 B = 6716.514330 C = 7081.473820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C 0.221 3.779 4 H -0.034 1.034 5 C -0.526 4.526 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.671 5.671 14 C 0.098 3.902 15 C -0.106 4.106 16 C -0.061 4.061 17 C -0.110 4.110 18 C -0.016 4.016 19 Cl -0.053 7.053 20 C -0.148 4.148 21 C 0.095 3.905 22 F -0.146 7.146 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.020 0.980 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 3.276 -18.168 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.112 3.888 4 H -0.016 1.016 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.301 5.301 14 C -0.031 4.031 15 C -0.108 4.108 16 C -0.080 4.080 17 C -0.128 4.128 18 C -0.043 4.043 19 Cl -0.024 7.024 20 C -0.167 4.167 21 C 0.075 3.925 22 F -0.124 7.124 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.038 0.962 31 H 0.105 0.895 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.456 2.741 -18.293 18.818 hybrid contribution 0.849 1.274 1.539 2.171 sum -2.607 4.014 -16.754 17.425 Atomic orbital electron populations 1.21302 0.96016 0.98563 1.00568 1.21296 0.96285 0.97177 0.98746 1.18960 0.91162 0.92578 0.86050 1.01646 1.21425 1.31533 1.11983 0.91467 0.92845 1.25571 0.95302 0.95703 1.01369 1.70007 1.38246 1.24253 1.22891 0.85648 0.78216 0.79111 0.79227 1.20102 1.21060 1.19585 1.60727 1.47127 1.15870 1.06349 1.20797 0.92943 1.00731 0.88621 1.20112 1.01034 0.92003 0.97602 1.21131 0.94199 1.01196 0.91464 1.21388 1.00120 0.92922 0.98407 1.20668 1.00239 0.93707 0.89722 1.98380 1.84844 1.84869 1.34261 1.21015 1.01058 1.01978 0.92644 1.17606 0.98079 0.88392 0.88401 1.91494 1.80600 1.74082 1.66241 0.94461 0.92640 0.95381 0.92497 0.95351 0.92973 0.85570 0.96214 0.89525 0.82243 0.81523 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.46 71.98 0.68 -3.93 16 2 C -0.10 -4.54 5.58 30.60 0.17 -4.37 16 3 C 0.22 10.96 2.30 44.17 0.10 11.06 16 4 H -0.03 -1.90 7.84 -2.39 -0.02 -1.92 16 5 C -0.53 -28.41 7.34 25.60 0.19 -28.22 16 6 H 0.05 2.88 7.60 -2.91 -0.02 2.86 16 7 C 0.02 1.09 5.30 84.66 0.45 1.54 16 8 N -0.91 -52.04 11.34 21.45 0.24 -51.79 16 9 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.67 -27.81 5.50 -499.48 -2.74 -30.55 16 14 C 0.10 3.42 5.30 85.56 0.45 3.87 16 15 C -0.11 -3.03 5.44 -19.82 -0.11 -3.13 16 16 C -0.06 -1.36 9.67 22.26 0.22 -1.14 16 17 C -0.11 -2.04 9.83 22.30 0.22 -1.83 16 18 C -0.02 -0.33 6.32 22.32 0.14 -0.19 16 19 Cl -0.05 -0.92 28.96 -2.72 -0.08 -1.00 16 20 C -0.15 -3.42 9.81 22.34 0.22 -3.20 16 21 C 0.10 2.71 7.25 22.37 0.16 2.88 16 22 F -0.15 -4.76 16.66 44.97 0.75 -4.01 16 23 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16 25 H 0.03 1.31 7.37 -2.39 -0.02 1.29 16 26 H 0.06 3.03 6.13 -2.38 -0.01 3.02 16 27 H 0.03 1.20 7.43 -2.39 -0.02 1.18 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.33 14.09 8.24 -89.69 -0.74 13.35 16 30 H 0.02 0.74 7.94 -2.38 -0.02 0.72 16 31 H 0.09 2.87 7.25 -2.39 -0.02 2.85 16 32 H 0.16 2.97 8.03 -2.91 -0.02 2.95 16 33 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -58.63 304.81 3.46 -55.17 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.38 Total: 13.34 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 2.89 Total: -26.67 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.50 Total: -82.35 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.75 Total: -4.01 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -58.63 3.46 -55.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162963929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.733 kcal (2) G-P(sol) polarization free energy of solvation -58.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds