Wall clock time and date at job start Mon Mar 30 2020 01:10:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.46849 * 2 1
4 4 H 1.08994 * 109.47029 * 185.16339 * 3 2 1
5 5 C 1.50697 * 109.47066 * 305.16484 * 3 2 1
6 6 H 1.07994 * 120.00487 * 120.00072 * 5 3 2
7 7 C 1.37884 * 119.99890 * 299.99870 * 5 3 2
8 8 N 1.31515 * 119.99793 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 119.99959 * 180.02562 * 7 5 3
10 10 H 1.48499 * 109.47059 * 59.99956 * 9 7 5
11 11 H 1.48504 * 109.46845 * 179.97438 * 9 7 5
12 12 H 1.48491 * 109.47279 * 299.99807 * 9 7 5
13 13 N 1.46907 * 109.47115 * 65.16100 * 3 2 1
14 14 C 1.46896 * 110.99618 * 85.91561 * 13 3 2
15 15 C 1.50703 * 109.46869 * 174.75138 * 14 13 3
16 16 C 1.38207 * 120.00564 * 259.72604 * 15 14 13
17 17 C 1.38333 * 120.01076 * 179.79475 * 16 15 14
18 18 Cl 1.73605 * 119.98748 * 180.20644 * 17 16 15
19 19 C 1.38374 * 120.02484 * 0.45237 * 17 16 15
20 20 C 1.38170 * 120.01324 * 359.79811 * 19 17 16
21 21 C 1.38439 * 120.00430 * 79.99864 * 15 14 13
22 22 F 1.35098 * 120.01447 * 359.97438 * 21 15 14
23 23 H 1.09005 * 109.46880 * 174.84771 * 1 2 3
24 24 H 1.08997 * 109.47739 * 294.84703 * 1 2 3
25 25 H 1.09000 * 109.47362 * 54.85171 * 1 2 3
26 26 H 1.08998 * 109.47318 * 240.00133 * 2 1 3
27 27 H 1.08996 * 109.47182 * 119.99897 * 2 1 3
28 28 H 0.96997 * 119.99628 * 179.97438 * 8 7 5
29 29 H 1.00904 * 110.99593 * 321.96024 * 13 3 2
30 30 H 1.09000 * 109.46966 * 294.74724 * 14 13 3
31 31 H 1.08996 * 109.47606 * 54.75283 * 14 13 3
32 32 H 1.07998 * 119.99776 * 359.97438 * 16 15 14
33 33 H 1.08007 * 119.99260 * 179.77262 * 19 17 16
34 34 H 1.07993 * 120.00560 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 3.1259 1.4440 -0.0925
5 6 1.4359 2.1889 -1.1615
6 1 0.8267 3.0627 -0.9839
7 6 1.6609 1.7560 -2.4511
8 7 2.4032 0.6921 -2.6675
9 14 0.9127 2.6815 -3.8909
10 1 1.4082 4.0814 -3.8908
11 1 1.3027 2.0191 -5.1616
12 1 -0.5669 2.6801 -3.7652
13 7 1.6546 2.0982 1.2569
14 6 2.6434 1.8370 2.3114
15 6 2.2842 2.6270 3.5435
16 6 2.9414 3.8106 3.8216
17 6 2.6088 4.5380 4.9503
18 17 3.4310 6.0273 5.2962
19 6 1.6246 4.0763 5.8064
20 6 0.9705 2.8906 5.5321
21 6 1.2998 2.1644 4.4000
22 9 0.6605 1.0049 4.1312
23 1 -0.3633 -1.0236 -0.0923
24 1 -0.3634 0.4318 0.9325
25 1 -0.3634 0.5916 -0.8403
26 1 1.8934 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 2.5612 0.3874 -3.5747
29 1 0.7320 1.8102 1.5468
30 1 2.6476 0.7735 2.5502
31 1 3.6325 2.1354 1.9641
32 1 3.7127 4.1692 3.1562
33 1 1.3679 4.6428 6.6895
34 1 0.2027 2.5302 6.2006
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000163696198.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:35
Heat of formation + Delta-G solvation = -37.063094 kcal
Electronic energy + Delta-G solvation = -18417.508836 eV
Core-core repulsion = 15290.157693 eV
Total energy + Delta-G solvation = -3127.351143 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-48.84885 -39.24958 -36.77014 -36.28146 -33.27721 -31.51040 -30.43898 -29.62889
-26.62027 -24.58913 -23.20608 -22.90130 -21.35719 -19.33131 -17.61761 -16.73198
-16.48406 -15.87181 -15.62651 -14.78087 -14.68754 -14.27419 -13.70482 -13.53159
-13.28926 -13.11967 -12.82910 -12.51435 -12.15815 -12.07070 -11.68668 -11.29736
-11.20019 -10.99092 -10.85799 -10.65359 -10.51956 -9.99773 -9.86354 -9.57264
-9.09673 -8.98616 -8.53853 -8.34512 -7.29147 -5.97842 -3.99486 0.93405
1.08900 2.01940 3.34804 3.38331 3.39051 3.42980 4.21609 4.44379
4.58120 4.69328 5.00591 5.15806 5.33792 5.45052 5.48600 5.72518
5.86162 5.95485 6.06834 6.11305 6.33137 6.37407 6.40125 6.57274
6.69566 6.91290 7.23009 7.26319 7.51711 7.68283 7.87098 8.24789
8.47235 8.57714 9.05441 9.63942 11.09145
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.021952 B = 0.004787 C = 0.004190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1275.182965 B = 5847.170555 C = 6680.679098
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.146 4.146
3 C 0.216 3.784
4 H 0.034 0.966
5 C -0.489 4.489
6 H 0.061 0.939
7 C 0.058 3.942
8 N -0.896 5.896
9 Si 0.895 3.105
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.278 1.278
13 N -0.677 5.677
14 C 0.094 3.906
15 C -0.083 4.083
16 C -0.066 4.066
17 C -0.046 4.046
18 Cl -0.070 7.070
19 C -0.092 4.092
20 C -0.144 4.144
21 C 0.106 3.894
22 F -0.132 7.132
23 H 0.024 0.976
24 H 0.027 0.973
25 H 0.069 0.931
26 H 0.094 0.906
27 H 0.011 0.989
28 H 0.260 0.740
29 H 0.329 0.671
30 H 0.036 0.964
31 H 0.082 0.918
32 H 0.144 0.856
33 H 0.139 0.861
34 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.093 4.353 16.223 16.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.185 4.185
3 C 0.108 3.892
4 H 0.052 0.948
5 C -0.528 4.528
6 H 0.079 0.921
7 C -0.143 4.143
8 N -0.536 5.536
9 Si 0.723 3.277
10 H -0.203 1.203
11 H -0.215 1.215
12 H -0.204 1.204
13 N -0.308 5.308
14 C -0.036 4.036
15 C -0.085 4.085
16 C -0.085 4.085
17 C -0.073 4.073
18 Cl -0.042 7.042
19 C -0.111 4.111
20 C -0.163 4.163
21 C 0.086 3.914
22 F -0.111 7.111
23 H 0.043 0.957
24 H 0.046 0.954
25 H 0.088 0.912
26 H 0.112 0.888
27 H 0.029 0.971
28 H 0.070 0.930
29 H 0.147 0.853
30 H 0.054 0.946
31 H 0.100 0.900
32 H 0.162 0.838
33 H 0.157 0.843
34 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 0.314 4.933 15.886 16.637
hybrid contribution -0.659 -0.601 -0.606 1.079
sum -0.345 4.332 15.280 15.886
Atomic orbital electron populations
1.21596 0.97633 0.98742 1.00786 1.22107 0.95117 1.00992 1.00298
1.19253 0.96066 0.88694 0.85140 0.94809 1.21001 1.30675 1.11542
0.89579 0.92053 1.24904 0.95515 0.95158 0.98700 1.69870 1.38901
1.23959 1.20829 0.86616 0.79560 0.79981 0.81568 1.20339 1.21503
1.20377 1.60940 1.03612 1.63176 1.03087 1.20857 0.98432 0.95604
0.88704 1.20116 0.95391 0.96156 0.96793 1.20872 0.99818 0.92681
0.95149 1.20900 0.98296 0.90267 0.97853 1.98366 1.78062 1.32914
1.94821 1.20787 0.95060 0.95822 0.99463 1.21015 1.02234 0.95660
0.97414 1.17685 0.94175 0.83883 0.95656 1.91520 1.80042 1.45774
1.93732 0.95724 0.95392 0.91215 0.88813 0.97058 0.93040 0.85263
0.94623 0.89966 0.83800 0.84349 0.84104
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.82 9.40 37.16 0.35 -2.47 16
2 C -0.15 -3.40 5.51 -26.73 -0.15 -3.55 16
3 C 0.22 5.25 2.33 -68.86 -0.16 5.09 16
4 H 0.03 0.90 7.70 -51.93 -0.40 0.50 16
5 C -0.49 -13.10 7.25 -34.44 -0.25 -13.35 16
6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16
7 C 0.06 1.57 5.28 -17.82 -0.09 1.47 16
8 N -0.90 -25.02 11.38 55.43 0.63 -24.39 16
9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16
10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
13 N -0.68 -14.20 6.19 -109.22 -0.68 -14.88 16
14 C 0.09 1.65 5.36 -4.98 -0.03 1.62 16
15 C -0.08 -1.25 5.44 -104.56 -0.57 -1.82 16
16 C -0.07 -0.90 9.45 -39.56 -0.37 -1.27 16
17 C -0.05 -0.56 6.32 -39.50 -0.25 -0.81 16
18 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 16
19 C -0.09 -0.98 9.83 -39.56 -0.39 -1.37 16
20 C -0.14 -1.64 10.03 -39.52 -0.40 -2.04 16
21 C 0.11 1.51 7.25 -39.42 -0.29 1.22 16
22 F -0.13 -2.05 16.66 2.25 0.04 -2.02 16
23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
24 H 0.03 0.55 6.63 -51.93 -0.34 0.21 16
25 H 0.07 1.65 6.85 -51.93 -0.36 1.29 16
26 H 0.09 2.45 6.23 -51.93 -0.32 2.12 16
27 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16
28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
29 H 0.33 6.83 6.69 -39.29 -0.26 6.57 16
30 H 0.04 0.64 7.34 -51.93 -0.38 0.26 16
31 H 0.08 1.42 7.78 -51.93 -0.40 1.02 16
32 H 0.14 1.87 8.03 -52.49 -0.42 1.44 16
33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16
34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16
LS Contribution 302.65 15.07 4.56 4.56
Total: -1.00 -27.40 302.65 -8.66 -36.06
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: -4.10 Total: 3.99 kcal
Atomic # 6 Polarization: -14.67 SS G_CDS: -2.59 Total: -17.27 kcal
Atomic # 7 Polarization: -39.22 SS G_CDS: -0.05 Total: -39.27 kcal
Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -27.40 -8.66 -36.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000163696198.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.000 kcal
(2) G-P(sol) polarization free energy of solvation -27.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.063 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds