Wall clock time and date at job start Mon Mar 30 2020 01:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46849 * 2 1 4 4 H 1.08994 * 109.47029 * 185.16339 * 3 2 1 5 5 C 1.50697 * 109.47066 * 305.16484 * 3 2 1 6 6 H 1.07994 * 120.00487 * 120.00072 * 5 3 2 7 7 C 1.37884 * 119.99890 * 299.99870 * 5 3 2 8 8 N 1.31515 * 119.99793 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47059 * 59.99956 * 9 7 5 11 11 H 1.48504 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47279 * 299.99807 * 9 7 5 13 13 N 1.46907 * 109.47115 * 65.16100 * 3 2 1 14 14 C 1.46896 * 110.99618 * 85.91561 * 13 3 2 15 15 C 1.50703 * 109.46869 * 174.75138 * 14 13 3 16 16 C 1.38207 * 120.00564 * 259.72604 * 15 14 13 17 17 C 1.38333 * 120.01076 * 179.79475 * 16 15 14 18 18 Cl 1.73605 * 119.98748 * 180.20644 * 17 16 15 19 19 C 1.38374 * 120.02484 * 0.45237 * 17 16 15 20 20 C 1.38170 * 120.01324 * 359.79811 * 19 17 16 21 21 C 1.38439 * 120.00430 * 79.99864 * 15 14 13 22 22 F 1.35098 * 120.01447 * 359.97438 * 21 15 14 23 23 H 1.09005 * 109.46880 * 174.84771 * 1 2 3 24 24 H 1.08997 * 109.47739 * 294.84703 * 1 2 3 25 25 H 1.09000 * 109.47362 * 54.85171 * 1 2 3 26 26 H 1.08998 * 109.47318 * 240.00133 * 2 1 3 27 27 H 1.08996 * 109.47182 * 119.99897 * 2 1 3 28 28 H 0.96997 * 119.99628 * 179.97438 * 8 7 5 29 29 H 1.00904 * 110.99593 * 321.96024 * 13 3 2 30 30 H 1.09000 * 109.46966 * 294.74724 * 14 13 3 31 31 H 1.08996 * 109.47606 * 54.75283 * 14 13 3 32 32 H 1.07998 * 119.99776 * 359.97438 * 16 15 14 33 33 H 1.08007 * 119.99260 * 179.77262 * 19 17 16 34 34 H 1.07993 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1259 1.4440 -0.0925 5 6 1.4359 2.1889 -1.1615 6 1 0.8267 3.0627 -0.9839 7 6 1.6609 1.7560 -2.4511 8 7 2.4032 0.6921 -2.6675 9 14 0.9127 2.6815 -3.8909 10 1 1.4082 4.0814 -3.8908 11 1 1.3027 2.0191 -5.1616 12 1 -0.5669 2.6801 -3.7652 13 7 1.6546 2.0982 1.2569 14 6 2.6434 1.8370 2.3114 15 6 2.2842 2.6270 3.5435 16 6 2.9414 3.8106 3.8216 17 6 2.6088 4.5380 4.9503 18 17 3.4310 6.0273 5.2962 19 6 1.6246 4.0763 5.8064 20 6 0.9705 2.8906 5.5321 21 6 1.2998 2.1644 4.4000 22 9 0.6605 1.0049 4.1312 23 1 -0.3633 -1.0236 -0.0923 24 1 -0.3634 0.4318 0.9325 25 1 -0.3634 0.5916 -0.8403 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5612 0.3874 -3.5747 29 1 0.7320 1.8102 1.5468 30 1 2.6476 0.7735 2.5502 31 1 3.6325 2.1354 1.9641 32 1 3.7127 4.1692 3.1562 33 1 1.3679 4.6428 6.6895 34 1 0.2027 2.5302 6.2006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163696198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:35 Heat of formation + Delta-G solvation = -37.063094 kcal Electronic energy + Delta-G solvation = -18417.508836 eV Core-core repulsion = 15290.157693 eV Total energy + Delta-G solvation = -3127.351143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.84885 -39.24958 -36.77014 -36.28146 -33.27721 -31.51040 -30.43898 -29.62889 -26.62027 -24.58913 -23.20608 -22.90130 -21.35719 -19.33131 -17.61761 -16.73198 -16.48406 -15.87181 -15.62651 -14.78087 -14.68754 -14.27419 -13.70482 -13.53159 -13.28926 -13.11967 -12.82910 -12.51435 -12.15815 -12.07070 -11.68668 -11.29736 -11.20019 -10.99092 -10.85799 -10.65359 -10.51956 -9.99773 -9.86354 -9.57264 -9.09673 -8.98616 -8.53853 -8.34512 -7.29147 -5.97842 -3.99486 0.93405 1.08900 2.01940 3.34804 3.38331 3.39051 3.42980 4.21609 4.44379 4.58120 4.69328 5.00591 5.15806 5.33792 5.45052 5.48600 5.72518 5.86162 5.95485 6.06834 6.11305 6.33137 6.37407 6.40125 6.57274 6.69566 6.91290 7.23009 7.26319 7.51711 7.68283 7.87098 8.24789 8.47235 8.57714 9.05441 9.63942 11.09145 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.004787 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.182965 B = 5847.170555 C = 6680.679098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.094 3.906 15 C -0.083 4.083 16 C -0.066 4.066 17 C -0.046 4.046 18 Cl -0.070 7.070 19 C -0.092 4.092 20 C -0.144 4.144 21 C 0.106 3.894 22 F -0.132 7.132 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 4.353 16.223 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.036 4.036 15 C -0.085 4.085 16 C -0.085 4.085 17 C -0.073 4.073 18 Cl -0.042 7.042 19 C -0.111 4.111 20 C -0.163 4.163 21 C 0.086 3.914 22 F -0.111 7.111 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.314 4.933 15.886 16.637 hybrid contribution -0.659 -0.601 -0.606 1.079 sum -0.345 4.332 15.280 15.886 Atomic orbital electron populations 1.21596 0.97633 0.98742 1.00786 1.22107 0.95117 1.00992 1.00298 1.19253 0.96066 0.88694 0.85140 0.94809 1.21001 1.30675 1.11542 0.89579 0.92053 1.24904 0.95515 0.95158 0.98700 1.69870 1.38901 1.23959 1.20829 0.86616 0.79560 0.79981 0.81568 1.20339 1.21503 1.20377 1.60940 1.03612 1.63176 1.03087 1.20857 0.98432 0.95604 0.88704 1.20116 0.95391 0.96156 0.96793 1.20872 0.99818 0.92681 0.95149 1.20900 0.98296 0.90267 0.97853 1.98366 1.78062 1.32914 1.94821 1.20787 0.95060 0.95822 0.99463 1.21015 1.02234 0.95660 0.97414 1.17685 0.94175 0.83883 0.95656 1.91520 1.80042 1.45774 1.93732 0.95724 0.95392 0.91215 0.88813 0.97058 0.93040 0.85263 0.94623 0.89966 0.83800 0.84349 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.40 37.16 0.35 -2.47 16 2 C -0.15 -3.40 5.51 -26.73 -0.15 -3.55 16 3 C 0.22 5.25 2.33 -68.86 -0.16 5.09 16 4 H 0.03 0.90 7.70 -51.93 -0.40 0.50 16 5 C -0.49 -13.10 7.25 -34.44 -0.25 -13.35 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.57 5.28 -17.82 -0.09 1.47 16 8 N -0.90 -25.02 11.38 55.43 0.63 -24.39 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.68 -14.20 6.19 -109.22 -0.68 -14.88 16 14 C 0.09 1.65 5.36 -4.98 -0.03 1.62 16 15 C -0.08 -1.25 5.44 -104.56 -0.57 -1.82 16 16 C -0.07 -0.90 9.45 -39.56 -0.37 -1.27 16 17 C -0.05 -0.56 6.32 -39.50 -0.25 -0.81 16 18 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 16 19 C -0.09 -0.98 9.83 -39.56 -0.39 -1.37 16 20 C -0.14 -1.64 10.03 -39.52 -0.40 -2.04 16 21 C 0.11 1.51 7.25 -39.42 -0.29 1.22 16 22 F -0.13 -2.05 16.66 2.25 0.04 -2.02 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.03 0.55 6.63 -51.93 -0.34 0.21 16 25 H 0.07 1.65 6.85 -51.93 -0.36 1.29 16 26 H 0.09 2.45 6.23 -51.93 -0.32 2.12 16 27 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.33 6.83 6.69 -39.29 -0.26 6.57 16 30 H 0.04 0.64 7.34 -51.93 -0.38 0.26 16 31 H 0.08 1.42 7.78 -51.93 -0.40 1.02 16 32 H 0.14 1.87 8.03 -52.49 -0.42 1.44 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -27.40 302.65 -8.66 -36.06 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.10 Total: 3.99 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.59 Total: -17.27 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.05 Total: -39.27 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.40 -8.66 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163696198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.000 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds