Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46849 * 2 1 4 4 H 1.08994 * 109.47029 * 185.16339 * 3 2 1 5 5 C 1.50697 * 109.47066 * 305.16484 * 3 2 1 6 6 H 1.07994 * 120.00487 * 120.00072 * 5 3 2 7 7 C 1.37884 * 119.99890 * 299.99870 * 5 3 2 8 8 N 1.31515 * 119.99793 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47059 * 59.99956 * 9 7 5 11 11 H 1.48504 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47279 * 299.99807 * 9 7 5 13 13 N 1.46907 * 109.47115 * 65.16100 * 3 2 1 14 14 C 1.46896 * 110.99618 * 85.91561 * 13 3 2 15 15 C 1.50703 * 109.46869 * 174.75138 * 14 13 3 16 16 C 1.38207 * 120.00564 * 259.72604 * 15 14 13 17 17 C 1.38333 * 120.01076 * 179.79475 * 16 15 14 18 18 Cl 1.73605 * 119.98748 * 180.20644 * 17 16 15 19 19 C 1.38374 * 120.02484 * 0.45237 * 17 16 15 20 20 C 1.38170 * 120.01324 * 359.79811 * 19 17 16 21 21 C 1.38439 * 120.00430 * 79.99864 * 15 14 13 22 22 F 1.35098 * 120.01447 * 359.97438 * 21 15 14 23 23 H 1.09005 * 109.46880 * 174.84771 * 1 2 3 24 24 H 1.08997 * 109.47739 * 294.84703 * 1 2 3 25 25 H 1.09000 * 109.47362 * 54.85171 * 1 2 3 26 26 H 1.08998 * 109.47318 * 240.00133 * 2 1 3 27 27 H 1.08996 * 109.47182 * 119.99897 * 2 1 3 28 28 H 0.96997 * 119.99628 * 179.97438 * 8 7 5 29 29 H 1.00904 * 110.99593 * 321.96024 * 13 3 2 30 30 H 1.09000 * 109.46966 * 294.74724 * 14 13 3 31 31 H 1.08996 * 109.47606 * 54.75283 * 14 13 3 32 32 H 1.07998 * 119.99776 * 359.97438 * 16 15 14 33 33 H 1.08007 * 119.99260 * 179.77262 * 19 17 16 34 34 H 1.07993 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1259 1.4440 -0.0925 5 6 1.4359 2.1889 -1.1615 6 1 0.8267 3.0627 -0.9839 7 6 1.6609 1.7560 -2.4511 8 7 2.4032 0.6921 -2.6675 9 14 0.9127 2.6815 -3.8909 10 1 1.4082 4.0814 -3.8908 11 1 1.3027 2.0191 -5.1616 12 1 -0.5669 2.6801 -3.7652 13 7 1.6546 2.0982 1.2569 14 6 2.6434 1.8370 2.3114 15 6 2.2842 2.6270 3.5435 16 6 2.9414 3.8106 3.8216 17 6 2.6088 4.5380 4.9503 18 17 3.4310 6.0273 5.2962 19 6 1.6246 4.0763 5.8064 20 6 0.9705 2.8906 5.5321 21 6 1.2998 2.1644 4.4000 22 9 0.6605 1.0049 4.1312 23 1 -0.3633 -1.0236 -0.0923 24 1 -0.3634 0.4318 0.9325 25 1 -0.3634 0.5916 -0.8403 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5612 0.3874 -3.5747 29 1 0.7320 1.8102 1.5468 30 1 2.6476 0.7735 2.5502 31 1 3.6325 2.1354 1.9641 32 1 3.7127 4.1692 3.1562 33 1 1.3679 4.6428 6.6895 34 1 0.2027 2.5302 6.2006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163696198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = -51.696866 kcal Electronic energy + Delta-G solvation = -18418.143404 eV Core-core repulsion = 15290.157693 eV Total energy + Delta-G solvation = -3127.985710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96783 -40.28903 -38.33402 -37.38208 -34.90174 -33.22831 -31.61574 -30.97669 -28.43588 -26.14423 -25.04277 -23.90775 -22.52681 -21.22137 -18.69734 -18.22303 -17.72782 -17.23920 -16.88054 -16.61553 -16.25842 -15.50289 -15.15725 -14.77959 -14.48285 -14.41387 -14.32346 -14.13771 -13.75134 -13.40315 -13.18270 -12.79263 -12.66688 -12.46462 -12.31250 -12.20497 -11.97484 -11.78850 -11.64189 -11.44948 -11.00742 -10.42696 -10.09300 -9.56220 -9.00593 -8.05129 -6.13557 -0.07547 0.10873 1.08662 1.45229 1.45768 1.53358 2.37371 2.47759 3.20312 3.23750 3.49455 3.68243 3.87923 4.06866 4.11413 4.33744 4.52488 4.56991 4.60853 4.72852 4.77691 4.81443 5.02105 5.08583 5.11171 5.21321 5.32708 5.40055 5.67789 5.68519 5.72587 5.81035 6.29404 6.62644 6.74555 6.96422 7.53694 9.00134 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.004787 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.182965 B = 5847.170555 C = 6680.679098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.098 3.902 15 C -0.102 4.102 16 C -0.074 4.074 17 C -0.049 4.049 18 Cl -0.060 7.060 19 C -0.078 4.078 20 C -0.132 4.132 21 C 0.089 3.911 22 F -0.144 7.144 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.259 0.741 29 H 0.331 0.669 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 5.380 17.973 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.310 5.310 14 C -0.031 4.031 15 C -0.104 4.104 16 C -0.094 4.094 17 C -0.076 4.076 18 Cl -0.031 7.031 19 C -0.096 4.096 20 C -0.151 4.151 21 C 0.069 3.931 22 F -0.123 7.123 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.191 0.809 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.771 5.969 17.654 18.652 hybrid contribution -0.275 -0.867 -1.045 1.385 sum -1.046 5.102 16.609 17.406 Atomic orbital electron populations 1.21473 0.96053 0.99638 1.00638 1.21958 0.96447 1.00043 0.99383 1.19006 0.93945 0.89402 0.86346 0.97938 1.21207 1.30576 1.11412 0.90761 0.93033 1.25573 0.95883 0.95863 1.00946 1.69998 1.39807 1.25037 1.21151 0.85710 0.79000 0.78754 0.78734 1.20144 1.21194 1.19746 1.60804 1.04397 1.62803 1.03012 1.20760 0.97329 0.95950 0.89034 1.19855 0.97196 0.96976 0.96365 1.20875 0.99925 0.92538 0.96041 1.21004 0.98585 0.90476 0.97501 1.98374 1.77946 1.32125 1.94650 1.21196 0.93407 0.95321 0.99725 1.21341 1.02263 0.95110 0.96387 1.17937 0.94352 0.84051 0.96756 1.91486 1.80270 1.46541 1.93972 0.93873 0.93754 0.93430 0.91690 0.95869 0.93151 0.85074 0.95140 0.90534 0.84059 0.80937 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 9.40 71.98 0.68 -4.49 16 2 C -0.14 -6.58 5.51 30.60 0.17 -6.41 16 3 C 0.22 11.07 2.33 44.17 0.10 11.17 16 4 H 0.00 0.15 7.70 -2.39 -0.02 0.13 16 5 C -0.50 -27.30 7.25 25.60 0.19 -27.12 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 7 C 0.02 0.86 5.28 84.66 0.45 1.31 16 8 N -0.92 -52.36 11.38 21.45 0.24 -52.12 16 9 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.68 -28.93 6.19 -499.46 -3.09 -32.03 16 14 C 0.10 3.54 5.36 85.56 0.46 4.00 16 15 C -0.10 -3.05 5.44 -19.82 -0.11 -3.16 16 16 C -0.07 -1.97 9.45 22.28 0.21 -1.76 16 17 C -0.05 -1.07 6.32 22.32 0.14 -0.93 16 18 Cl -0.06 -1.19 28.96 -2.72 -0.08 -1.27 16 19 C -0.08 -1.38 9.83 22.29 0.22 -1.16 16 20 C -0.13 -2.58 10.03 22.31 0.22 -2.36 16 21 C 0.09 2.40 7.25 22.37 0.16 2.56 16 22 F -0.14 -4.33 16.66 44.97 0.75 -3.58 16 23 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.04 1.72 6.63 -2.39 -0.02 1.70 16 25 H 0.05 2.23 6.85 -2.39 -0.02 2.22 16 26 H 0.06 3.47 6.23 -2.39 -0.01 3.46 16 27 H 0.02 1.01 7.50 -2.39 -0.02 0.99 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.33 13.74 6.69 -89.69 -0.60 13.14 16 30 H 0.03 1.12 7.34 -2.39 -0.02 1.10 16 31 H 0.08 2.77 7.78 -2.39 -0.02 2.75 16 32 H 0.14 3.68 8.03 -2.91 -0.02 3.66 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -59.14 302.65 3.25 -55.89 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.52 Total: 15.62 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 2.89 Total: -28.33 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.85 Total: -84.15 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.75 Total: -3.58 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -59.14 3.25 -55.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163696198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.192 kcal (2) G-P(sol) polarization free energy of solvation -59.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds