Wall clock time and date at job start Mon Mar 30 2020 00:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48493 * 109.47108 * 270.00696 * 3 2 1 5 5 H 1.48498 * 109.47097 * 30.00904 * 3 2 1 6 6 H 1.48499 * 109.46508 * 150.00558 * 3 2 1 7 7 C 1.37878 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00019 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.38261 * 119.97633 * 269.72282 * 14 13 12 16 16 C 1.38222 * 120.06071 * 179.76307 * 15 14 13 17 17 C 1.38323 * 120.01004 * 0.51883 * 16 15 14 18 18 Cl 1.73602 * 120.02159 * 179.72022 * 17 16 15 19 19 C 1.38546 * 119.95373 * 359.73473 * 17 16 15 20 20 F 1.35095 * 120.03287 * 180.02562 * 19 17 16 21 21 C 1.38201 * 119.97402 * 90.00156 * 14 13 12 22 22 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 24 24 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 25 25 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 26 26 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 27 27 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 28 28 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 29 29 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 30 30 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 31 31 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 32 32 H 1.08001 * 119.96736 * 0.02562 * 15 14 13 33 33 H 1.07997 * 119.99007 * 180.22871 * 16 15 14 34 34 H 1.07995 * 120.00857 * 359.95219 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 7.5097 -4.0607 -0.0020 14 6 7.9739 -5.4944 -0.0019 15 6 8.1927 -6.1496 1.1958 16 6 8.6138 -7.4661 1.1980 17 6 8.8271 -8.1262 0.0013 18 17 9.3630 -9.7775 0.0038 19 6 8.6131 -7.4686 -1.1992 20 9 8.8204 -8.1119 -2.3689 21 6 8.1862 -6.1516 -1.1990 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8887 24 1 3.8745 -0.6801 -0.8912 25 1 3.6579 -3.1506 -0.8907 26 1 3.6586 -3.1501 0.8893 27 1 5.9155 -2.1224 0.8873 28 1 5.9142 -2.1231 -0.8927 29 1 5.6663 -4.5372 0.7806 30 1 7.8862 -3.5573 -0.8925 31 1 7.8869 -3.5562 0.8875 32 1 8.0303 -5.6335 2.1305 33 1 8.7808 -7.9779 2.1343 34 1 8.0187 -5.6380 -2.1341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163864203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:26 Heat of formation + Delta-G solvation = -43.326768 kcal Electronic energy + Delta-G solvation = -17168.524829 eV Core-core repulsion = 14040.902073 eV Total energy + Delta-G solvation = -3127.622756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.22441 -39.69701 -37.12021 -36.35942 -33.78459 -32.14891 -31.12925 -30.50280 -27.21069 -24.88280 -23.35786 -22.17200 -21.72358 -20.11390 -17.82301 -17.08403 -16.80785 -16.66371 -16.05358 -15.69652 -14.83957 -14.55289 -14.29473 -14.07780 -13.91132 -13.52345 -13.26753 -12.67332 -12.63819 -12.46458 -11.90866 -11.74744 -11.59365 -11.54008 -11.24816 -10.99443 -10.81903 -9.98948 -9.76652 -9.65206 -9.32403 -9.18956 -8.98789 -8.54383 -8.38382 -6.04460 -4.02496 0.56880 0.74198 1.65877 3.03444 3.29761 3.37035 3.39906 3.71845 4.20051 4.26541 4.44419 4.52023 4.71083 4.82710 5.09586 5.17579 5.29235 5.41406 5.49451 5.58529 5.61805 5.66103 5.71533 6.08305 6.10456 6.33119 6.47725 6.51533 6.88018 7.06362 7.30967 7.37007 7.45739 7.79399 8.54361 9.01072 9.57903 11.09116 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044093 B = 0.002625 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.873781 B =10663.503427 C =10693.648852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.685 5.685 13 C 0.093 3.907 14 C -0.043 4.043 15 C -0.113 4.113 16 C -0.082 4.082 17 C -0.078 4.078 18 Cl -0.055 7.055 19 C 0.109 3.891 20 F -0.128 7.128 21 C -0.120 4.120 22 H 0.263 0.737 23 H 0.013 0.987 24 H 0.011 0.989 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.342 0.658 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.935 -14.861 1.899 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.072 4.072 12 N -0.316 5.316 13 C -0.036 4.036 14 C -0.043 4.043 15 C -0.132 4.132 16 C -0.101 4.101 17 C -0.105 4.105 18 Cl -0.026 7.026 19 C 0.089 3.911 20 F -0.106 7.106 21 C -0.140 4.140 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.160 0.840 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.781 -14.967 1.165 26.453 hybrid contribution 0.584 0.858 0.678 1.239 sum 22.364 -14.109 1.843 26.507 Atomic orbital electron populations 1.69920 1.06309 1.26859 1.51247 1.25053 0.94742 0.99195 0.94631 0.86759 0.80278 0.83617 0.78486 1.20292 1.21433 1.19099 1.21150 0.89514 0.94477 1.50638 0.91015 1.19540 0.97200 0.92191 0.96123 1.21450 0.90872 0.99763 1.01705 1.22199 0.97840 0.87065 1.00096 1.60589 1.05182 1.15601 1.50252 1.20946 0.89799 0.90826 1.02051 1.19834 0.95912 0.96572 0.92015 1.21140 0.99662 0.93922 0.98464 1.20942 0.98258 0.94516 0.96380 1.21010 1.07400 0.87959 0.94178 1.98387 1.88491 1.16835 1.98896 1.17416 1.02118 0.91274 0.80322 1.91544 1.92395 1.81328 1.45323 1.21067 1.00498 0.92115 1.00294 0.92754 0.96841 0.97029 0.91868 0.92945 0.95514 0.91249 0.84035 0.89677 0.93765 0.84423 0.83952 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.91 5.41 -26.73 -0.14 -2.05 16 11 C 0.06 0.84 5.69 -3.82 -0.02 0.82 16 12 N -0.69 -8.58 6.49 -115.05 -0.75 -9.32 16 13 C 0.09 0.90 5.81 -4.97 -0.03 0.88 16 14 C -0.04 -0.39 5.39 -104.63 -0.56 -0.96 16 15 C -0.11 -0.90 9.70 -39.58 -0.38 -1.28 16 16 C -0.08 -0.66 9.83 -39.56 -0.39 -1.05 16 17 C -0.08 -0.75 6.33 -39.44 -0.25 -1.00 16 18 Cl -0.06 -0.52 28.62 -51.86 -1.48 -2.00 16 19 C 0.11 1.15 7.28 -39.39 -0.29 0.86 16 20 F -0.13 -1.47 16.84 2.25 0.04 -1.43 16 21 C -0.12 -1.18 9.68 -39.52 -0.38 -1.57 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.34 4.04 8.72 -39.29 -0.34 3.70 16 30 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -30.70 311.11 -8.89 -39.59 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.49 Total: -2.12 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.99 Total: -19.13 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.03 Total: -36.55 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.70 -8.89 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163864203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.735 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds