Wall clock time and date at job start Mon Mar 30 2020 00:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48493 * 109.47108 * 270.00696 * 3 2 1 5 5 H 1.48498 * 109.47097 * 30.00904 * 3 2 1 6 6 H 1.48499 * 109.46508 * 150.00558 * 3 2 1 7 7 C 1.37878 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00019 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.38261 * 119.97633 * 269.72282 * 14 13 12 16 16 C 1.38222 * 120.06071 * 179.76307 * 15 14 13 17 17 C 1.38323 * 120.01004 * 0.51883 * 16 15 14 18 18 Cl 1.73602 * 120.02159 * 179.72022 * 17 16 15 19 19 C 1.38546 * 119.95373 * 359.73473 * 17 16 15 20 20 F 1.35095 * 120.03287 * 180.02562 * 19 17 16 21 21 C 1.38201 * 119.97402 * 90.00156 * 14 13 12 22 22 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 24 24 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 25 25 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 26 26 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 27 27 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 28 28 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 29 29 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 30 30 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 31 31 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 32 32 H 1.08001 * 119.96736 * 0.02562 * 15 14 13 33 33 H 1.07997 * 119.99007 * 180.22871 * 16 15 14 34 34 H 1.07995 * 120.00857 * 359.95219 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 7.5097 -4.0607 -0.0020 14 6 7.9739 -5.4944 -0.0019 15 6 8.1927 -6.1496 1.1958 16 6 8.6138 -7.4661 1.1980 17 6 8.8271 -8.1262 0.0013 18 17 9.3630 -9.7775 0.0038 19 6 8.6131 -7.4686 -1.1992 20 9 8.8204 -8.1119 -2.3689 21 6 8.1862 -6.1516 -1.1990 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8887 24 1 3.8745 -0.6801 -0.8912 25 1 3.6579 -3.1506 -0.8907 26 1 3.6586 -3.1501 0.8893 27 1 5.9155 -2.1224 0.8873 28 1 5.9142 -2.1231 -0.8927 29 1 5.6663 -4.5372 0.7806 30 1 7.8862 -3.5573 -0.8925 31 1 7.8869 -3.5562 0.8875 32 1 8.0303 -5.6335 2.1305 33 1 8.7808 -7.9779 2.1343 34 1 8.0187 -5.6380 -2.1341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163864203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:25 Heat of formation + Delta-G solvation = -61.795866 kcal Electronic energy + Delta-G solvation = -17169.325709 eV Core-core repulsion = 14040.902073 eV Total energy + Delta-G solvation = -3128.423636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.03498 -40.39433 -37.96140 -37.36852 -35.46978 -33.75580 -32.01552 -31.54532 -28.67145 -26.06662 -24.03804 -23.66761 -22.51662 -21.74213 -18.92626 -18.53328 -17.82548 -17.44013 -16.86359 -16.74624 -16.40355 -15.66737 -15.54472 -14.97872 -14.83778 -14.65787 -14.54945 -14.00642 -13.81991 -13.41440 -13.30472 -12.99162 -12.54961 -12.52637 -12.46287 -12.28051 -11.96303 -11.76756 -11.51434 -11.41786 -11.25014 -10.74728 -10.01903 -9.73636 -9.31401 -8.27741 -6.32240 -0.14238 0.06616 0.94709 1.38078 1.39969 1.52013 2.33753 2.38219 3.00147 3.07744 3.35152 3.56833 3.76977 4.06072 4.15373 4.22933 4.33526 4.47907 4.53192 4.70568 4.73964 4.84557 4.94096 4.95582 5.01151 5.03212 5.15045 5.39722 5.54700 5.64440 5.66077 5.68925 6.06436 6.31473 6.46786 6.76865 7.32490 8.89404 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044093 B = 0.002625 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.873781 B =10663.503427 C =10693.648852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.534 4.534 8 H 0.027 0.973 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.695 5.695 13 C 0.096 3.904 14 C -0.048 4.048 15 C -0.104 4.104 16 C -0.079 4.079 17 C -0.086 4.086 18 Cl -0.058 7.058 19 C 0.087 3.913 20 F -0.140 7.140 21 C -0.127 4.127 22 H 0.266 0.734 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.346 0.654 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.317 -13.895 2.965 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.058 4.058 12 N -0.326 5.326 13 C -0.032 4.032 14 C -0.049 4.049 15 C -0.123 4.123 16 C -0.098 4.098 17 C -0.114 4.114 18 Cl -0.029 7.029 19 C 0.067 3.933 20 F -0.118 7.118 21 C -0.146 4.146 22 H 0.074 0.926 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 24.188 -14.027 2.232 28.049 hybrid contribution -0.221 0.445 0.361 0.614 sum 23.966 -13.582 2.593 27.669 Atomic orbital electron populations 1.70089 1.08483 1.28177 1.52854 1.26118 0.95669 1.03848 0.94124 0.85574 0.79569 0.77768 0.79203 1.19226 1.21166 1.16454 1.21558 0.92504 0.92954 1.50226 0.95415 1.19495 0.93555 0.95162 0.96631 1.21275 0.94328 0.96790 1.00686 1.21900 0.94283 0.88717 1.00904 1.60477 1.07200 1.14127 1.50823 1.20956 0.87797 0.91318 1.03116 1.19849 0.96335 0.96427 0.92244 1.21437 0.98109 0.93759 0.98971 1.21242 0.97271 0.94626 0.96619 1.21214 1.07611 0.88008 0.94573 1.98383 1.88531 1.17057 1.98909 1.17633 1.03524 0.91822 0.80329 1.91506 1.92680 1.81596 1.46038 1.21164 1.00587 0.91972 1.00901 0.92552 0.95900 0.96221 0.93592 0.93433 0.94231 0.90880 0.83578 0.89388 0.91879 0.81900 0.81636 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.54 13.96 21.45 0.30 -60.24 16 2 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 3 Si 0.96 43.81 27.47 68.60 1.88 45.69 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 7 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.45 5.41 30.59 0.17 -3.29 16 11 C 0.07 1.92 5.69 86.30 0.49 2.41 16 12 N -0.69 -15.65 6.49 -517.92 -3.36 -19.01 16 13 C 0.10 1.59 5.81 85.55 0.50 2.08 16 14 C -0.05 -0.77 5.39 -19.87 -0.11 -0.87 16 15 C -0.10 -1.32 9.70 22.27 0.22 -1.11 16 16 C -0.08 -1.07 9.83 22.29 0.22 -0.85 16 17 C -0.09 -1.57 6.33 22.36 0.14 -1.42 16 18 Cl -0.06 -1.04 28.62 -2.72 -0.08 -1.12 16 19 C 0.09 1.78 7.28 22.39 0.16 1.95 16 20 F -0.14 -3.25 16.84 44.97 0.76 -2.49 16 21 C -0.13 -2.36 9.68 22.31 0.22 -2.14 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 24 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.35 7.32 8.72 -89.69 -0.78 6.54 16 30 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.48 311.11 2.60 -64.88 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.27 Total: 6.29 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 2.83 Total: -34.00 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.06 Total: -79.25 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.76 Total: -2.49 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -67.48 2.60 -64.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163864203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.082 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds