Wall clock time and date at job start Mon Mar 30 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46979 * 2 1 4 4 C 1.53002 * 109.47518 * 239.99707 * 2 1 3 5 5 C 1.50699 * 109.47014 * 119.99713 * 2 1 3 6 6 C 1.33340 * 125.94577 * 60.02807 * 5 2 1 7 7 N 1.32093 * 114.58665 * 179.76501 * 6 5 2 8 8 C 1.29767 * 116.85463 * 0.44868 * 7 6 5 9 9 S 1.76198 * 124.95350 * 179.84029 * 8 7 6 10 10 C 1.81002 * 99.99878 * 359.69250 * 9 8 7 11 11 C 1.53006 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 S 1.70964 * 110.09207 * 359.57265 * 8 7 6 21 21 H 1.08997 * 109.47490 * 300.00019 * 1 2 3 22 22 H 1.09008 * 109.47294 * 60.00719 * 1 2 3 23 23 H 1.09004 * 109.47336 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47357 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47321 * 299.99538 * 3 2 1 26 26 H 1.09005 * 109.47365 * 59.99626 * 3 2 1 27 27 H 1.08995 * 109.47074 * 300.00705 * 4 2 1 28 28 H 1.09000 * 109.46693 * 59.99876 * 4 2 1 29 29 H 1.09000 * 109.47073 * 179.97438 * 4 2 1 30 30 H 1.07999 * 122.70684 * 0.02562 * 6 5 2 31 31 H 1.09001 * 109.47446 * 60.00463 * 10 9 8 32 32 H 1.09001 * 109.47383 * 300.00236 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99666 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00103 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7847 -1.9790 1.5578 7 7 2.3429 -2.3740 2.6879 8 6 3.0435 -1.4938 3.3347 9 16 3.8745 -1.7880 4.8603 10 6 3.4284 -3.5210 5.1320 11 6 4.0557 -4.0102 6.4390 12 6 3.6848 -5.4533 6.6650 13 1 3.0635 -5.9697 5.9482 14 6 4.1379 -6.1139 7.7871 15 7 4.8940 -5.4850 8.6601 16 14 3.6776 -7.9025 8.0675 17 1 4.6991 -8.7805 7.4423 18 1 3.6164 -8.1751 9.5260 19 1 2.3512 -8.1739 7.4572 20 16 3.0487 -0.0092 2.4869 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7209 -1.2493 30 1 1.1802 -2.6322 0.9460 31 1 3.7971 -4.1254 4.3032 32 1 2.3439 -3.6118 5.1936 33 1 5.1402 -3.9195 6.3778 34 1 3.6867 -3.4059 7.2676 35 1 5.2125 -5.9496 9.4498 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164047772.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:30 Heat of formation + Delta-G solvation = -6.177648 kcal Electronic energy + Delta-G solvation = -15723.430640 eV Core-core repulsion = 13165.675673 eV Total energy + Delta-G solvation = -2557.754967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76283 -37.82826 -35.83917 -32.99985 -30.63873 -28.28656 -28.12490 -27.38058 -26.54734 -23.31706 -22.22513 -20.62699 -18.85641 -18.69907 -17.42450 -16.54095 -16.36444 -16.11001 -15.48852 -15.19638 -15.04328 -14.78533 -14.71267 -14.06712 -13.66967 -13.18981 -13.16684 -12.97179 -12.65135 -12.59102 -12.56129 -12.29758 -12.27458 -11.98346 -11.89369 -11.70756 -11.61331 -11.21894 -10.65687 -10.63870 -10.58614 -10.27431 -8.58795 -8.25742 -6.38723 -0.42159 -0.06875 0.59254 0.78416 1.21176 1.40680 1.41595 1.53324 1.74035 2.39373 3.07695 3.52158 3.73867 3.89656 4.01405 4.17816 4.33323 4.34497 4.52201 4.76763 4.76967 4.78264 4.86683 4.99887 5.00694 5.02121 5.13595 5.27533 5.32642 5.39287 5.41100 5.41969 5.69878 6.08474 6.58041 6.73525 7.30492 8.86064 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040497 B = 0.003561 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.240457 B = 7861.016669 C = 8350.589702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 C -0.152 4.152 4 C -0.135 4.135 5 C -0.203 4.203 6 C 0.028 3.972 7 N -0.501 5.501 8 C -0.015 4.015 9 S -0.045 6.045 10 C -0.058 4.058 11 C 0.042 3.958 12 C -0.543 4.543 13 H 0.062 0.938 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.971 3.029 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.264 1.264 20 S 0.203 5.797 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.189 0.811 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.005 0.995 34 H 0.005 0.995 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 14.255 -20.354 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 C -0.210 4.210 4 C -0.194 4.194 5 C -0.328 4.328 6 C -0.125 4.125 7 N -0.221 5.221 8 C -0.398 4.398 9 S 0.189 5.811 10 C -0.208 4.208 11 C 0.003 3.997 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.795 3.205 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.188 1.188 20 S 0.456 5.544 21 H 0.070 0.930 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.206 0.794 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.201 15.393 -19.004 25.230 hybrid contribution -1.152 -2.492 -0.457 2.783 sum -7.353 12.901 -19.461 24.480 Atomic orbital electron populations 1.21912 0.91898 1.02680 1.02877 1.19191 0.96453 0.94841 0.88663 1.22041 1.01357 0.93976 1.03587 1.21912 1.01030 1.00546 0.95878 1.26434 1.05502 0.98057 1.02806 1.21859 1.02100 0.95012 0.93535 1.67017 1.11577 1.34413 1.09067 1.28363 1.06583 0.98699 1.06205 1.85611 1.61826 1.17500 1.16148 1.23420 1.03515 0.91316 1.02528 1.18767 0.95093 0.95812 0.90061 1.21468 1.32498 0.96766 1.07551 0.91962 1.25966 0.94608 1.03417 0.95351 1.70082 1.35587 1.38921 1.12213 0.85360 0.79075 0.78605 0.77496 1.19568 1.20387 1.18815 1.83458 1.46624 1.11196 1.13126 0.93046 0.89668 0.92277 0.92402 0.89226 0.92393 0.92274 0.89668 0.93057 0.79378 0.90556 0.90584 0.97664 0.97647 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.34 71.98 0.60 -1.08 16 2 C 0.01 0.17 0.92 -52.93 -0.05 0.12 16 3 C -0.15 -1.87 7.59 71.98 0.55 -1.32 16 4 C -0.14 -1.68 8.34 71.98 0.60 -1.08 16 5 C -0.20 -4.51 5.14 24.58 0.13 -4.38 16 6 C 0.03 0.75 10.59 83.55 0.88 1.63 16 7 N -0.50 -17.59 9.84 -200.68 -1.97 -19.57 16 8 C -0.01 -0.50 7.46 130.55 0.97 0.47 16 9 S -0.04 -1.74 22.29 -56.49 -1.26 -3.00 16 10 C -0.06 -2.65 5.08 71.98 0.37 -2.29 16 11 C 0.04 2.27 4.98 29.85 0.15 2.42 16 12 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 13 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 14 C 0.01 0.31 5.46 84.65 0.46 0.78 16 15 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 16 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 20 S 0.20 5.13 21.82 -56.49 -1.23 3.90 16 21 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.06 0.76 7.99 -2.39 -0.02 0.74 16 24 H 0.06 0.76 7.99 -2.39 -0.02 0.74 16 25 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.76 7.99 -2.38 -0.02 0.74 16 27 H 0.06 0.76 7.99 -2.39 -0.02 0.74 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.19 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.09 320.47 3.79 -62.30 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.05 Total: 2.09 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 4.89 Total: -36.00 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -1.69 Total: -75.81 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.49 Total: 0.90 kcal Total: -66.09 3.79 -62.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164047772.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.120 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds