Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 H 1.08996 * 109.47382 * 174.09077 * 3 2 1 5 5 C 1.50700 * 109.47069 * 54.08722 * 3 2 1 6 6 H 1.07998 * 120.00594 * 239.99883 * 5 3 2 7 7 C 1.37877 * 119.99926 * 60.00040 * 5 3 2 8 8 N 1.31518 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00345 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46855 * 60.00122 * 9 7 5 11 11 H 1.48491 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47169 * 300.00494 * 9 7 5 13 13 N 1.46900 * 109.47222 * 294.08933 * 3 2 1 14 14 C 1.46895 * 110.99900 * 275.76308 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.23528 * 14 13 3 16 16 C 1.38238 * 120.00063 * 259.72100 * 15 14 13 17 17 C 1.38223 * 120.04698 * 179.77077 * 16 15 14 18 18 C 1.38262 * 120.05787 * 0.50575 * 17 16 15 19 19 C 1.38274 * 120.01520 * 359.74365 * 18 17 16 20 20 Cl 1.73605 * 120.02770 * 179.97438 * 19 18 17 21 21 C 1.38398 * 120.01030 * 79.99771 * 15 14 13 22 22 F 1.35099 * 120.02862 * 359.97438 * 21 15 14 23 23 H 1.08998 * 109.46881 * 298.55932 * 1 2 3 24 24 H 1.08998 * 109.47017 * 178.56330 * 1 2 3 25 25 H 1.08993 * 109.46878 * 58.55839 * 1 2 3 26 26 H 1.08996 * 109.47150 * 119.99906 * 2 1 3 27 27 H 1.08997 * 109.46921 * 239.99825 * 2 1 3 28 28 H 0.97004 * 119.99905 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99981 * 39.71434 * 13 3 2 30 30 H 1.09005 * 109.47061 * 296.22799 * 14 13 3 31 31 H 1.08997 * 109.47274 * 56.23314 * 14 13 3 32 32 H 1.07995 * 119.97846 * 359.97438 * 16 15 14 33 33 H 1.07993 * 119.97503 * 180.25600 * 17 16 15 34 34 H 1.08005 * 119.99126 * 179.72662 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1939 1.1507 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3703 0.7037 2.6751 9 14 0.8652 2.6984 3.8714 10 1 -0.6128 2.6965 3.7274 11 1 1.2393 2.0415 5.1495 12 1 1.3607 4.0983 3.8712 13 7 1.6704 2.0926 -1.2644 14 6 2.6513 1.7942 -2.3163 15 6 2.1920 2.3994 -3.6178 16 6 1.5771 1.6073 -4.5694 17 6 1.1512 2.1623 -5.7615 18 6 1.3487 3.5083 -6.0085 19 6 1.9681 4.3018 -5.0605 20 17 2.2169 5.9918 -5.3704 21 6 2.3907 3.7469 -3.8629 22 9 2.9960 4.5207 -2.9355 23 1 -0.3633 0.4913 0.9026 24 1 -0.3633 -1.0273 -0.0258 25 1 -0.3633 0.5360 -0.8767 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.5171 0.4029 3.5855 29 1 0.7406 1.8246 -1.5504 30 1 3.6184 2.2152 -2.0412 31 1 2.7443 0.7142 -2.4305 32 1 1.4265 0.5548 -4.3800 33 1 0.6673 1.5433 -6.5025 34 1 1.0195 3.9399 -6.9421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164869037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = -33.801798 kcal Electronic energy + Delta-G solvation = -18469.922873 eV Core-core repulsion = 15342.713151 eV Total energy + Delta-G solvation = -3127.209722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.64330 -39.23125 -36.83025 -36.30483 -33.22343 -31.41704 -30.42929 -29.71233 -26.61392 -24.58516 -23.23305 -22.77462 -21.41668 -19.32230 -17.62747 -16.66169 -16.44917 -15.75347 -15.56475 -14.77037 -14.57193 -14.50191 -13.72655 -13.21519 -13.09949 -13.00458 -12.86274 -12.49776 -12.39078 -11.84012 -11.58489 -11.44277 -11.32355 -10.99669 -10.84847 -10.64986 -10.53756 -10.00845 -9.84389 -9.58258 -9.03089 -8.84984 -8.63312 -8.33689 -7.27225 -5.96971 -3.98238 0.95701 1.07510 1.97811 3.35902 3.39935 3.40594 3.44536 4.17489 4.45741 4.65527 4.74626 5.05786 5.06412 5.35014 5.39193 5.52181 5.74895 5.86799 6.02881 6.13349 6.16562 6.30781 6.32020 6.38401 6.54764 6.70668 6.85719 7.23131 7.25257 7.48376 7.66993 7.88380 8.25467 8.49299 8.59051 9.06811 9.65254 11.10182 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.004834 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.501122 B = 5791.006190 C = 6513.759667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.096 3.904 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.079 4.079 20 Cl -0.059 7.059 21 C 0.135 3.865 22 F -0.114 7.114 23 H 0.066 0.934 24 H 0.022 0.978 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 1.863 -17.111 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.307 5.307 14 C -0.034 4.034 15 C -0.097 4.097 16 C -0.103 4.103 17 C -0.141 4.141 18 C -0.111 4.111 19 C -0.107 4.107 20 Cl -0.030 7.030 21 C 0.114 3.886 22 F -0.092 7.092 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.112 0.888 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.107 2.548 -16.747 16.975 hybrid contribution -0.492 -0.211 0.739 0.912 sum -1.600 2.337 -16.008 16.257 Atomic orbital electron populations 1.21566 0.97625 0.97985 1.01329 1.22113 0.95076 1.01068 1.00238 1.19229 0.96232 0.88642 0.85044 0.94772 1.20998 1.30544 1.11512 0.89658 0.92066 1.24895 0.95549 0.95170 0.98660 1.69872 1.39200 1.24155 1.20433 0.86620 0.79588 0.80090 0.81460 1.20391 1.21512 1.20314 1.60965 1.03590 1.63254 1.02902 1.20857 0.97918 0.97071 0.87506 1.20208 0.99916 0.91498 0.98116 1.21127 0.96211 1.00343 0.92654 1.21087 1.00951 0.94324 0.97772 1.20883 0.98262 0.93502 0.98442 1.21017 1.06712 0.86825 0.96134 1.98372 1.95611 1.13446 1.95558 1.17253 0.96763 0.88817 0.85755 1.91582 1.79819 1.73986 1.63835 0.91463 0.95880 0.95217 0.88849 0.97096 0.93067 0.85399 0.90361 0.94445 0.84652 0.84691 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.39 37.16 0.35 -2.31 16 2 C -0.15 -3.30 5.50 -26.73 -0.15 -3.45 16 3 C 0.22 5.25 2.33 -68.86 -0.16 5.09 16 4 H 0.03 0.92 7.86 -51.93 -0.41 0.52 16 5 C -0.49 -13.18 7.35 -34.44 -0.25 -13.43 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.57 5.22 -17.82 -0.09 1.48 16 8 N -0.90 -25.12 11.39 55.43 0.63 -24.49 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.13 6.24 -109.22 -0.68 -14.81 16 14 C 0.10 1.68 5.33 -4.98 -0.03 1.66 16 15 C -0.10 -1.44 5.36 -104.56 -0.56 -2.00 16 16 C -0.08 -1.00 9.67 -39.59 -0.38 -1.39 16 17 C -0.12 -1.22 10.04 -39.58 -0.40 -1.61 16 18 C -0.09 -0.98 9.83 -39.56 -0.39 -1.37 16 19 C -0.08 -1.06 6.33 -39.44 -0.25 -1.31 16 20 Cl -0.06 -0.75 28.62 -51.86 -1.48 -2.23 16 21 C 0.13 2.13 7.22 -39.39 -0.28 1.84 16 22 F -0.11 -2.08 16.24 2.25 0.04 -2.04 16 23 H 0.07 1.56 7.05 -51.93 -0.37 1.19 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 26 H 0.09 2.40 6.25 -51.93 -0.32 2.07 16 27 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.33 6.54 6.55 -39.29 -0.26 6.28 16 30 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 31 H 0.04 0.62 7.09 -51.93 -0.37 0.25 16 32 H 0.14 1.38 8.03 -52.49 -0.42 0.96 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -28.19 301.72 -8.65 -36.84 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.08 Total: 2.58 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.59 Total: -16.80 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.05 Total: -39.30 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.48 Total: -2.23 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.19 -8.65 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164869037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.037 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds