Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 H 1.08996 * 109.47382 * 174.09077 * 3 2 1 5 5 C 1.50700 * 109.47069 * 54.08722 * 3 2 1 6 6 H 1.07998 * 120.00594 * 239.99883 * 5 3 2 7 7 C 1.37877 * 119.99926 * 60.00040 * 5 3 2 8 8 N 1.31518 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00345 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46855 * 60.00122 * 9 7 5 11 11 H 1.48491 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47169 * 300.00494 * 9 7 5 13 13 N 1.46900 * 109.47222 * 294.08933 * 3 2 1 14 14 C 1.46895 * 110.99900 * 275.76308 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.23528 * 14 13 3 16 16 C 1.38238 * 120.00063 * 259.72100 * 15 14 13 17 17 C 1.38223 * 120.04698 * 179.77077 * 16 15 14 18 18 C 1.38262 * 120.05787 * 0.50575 * 17 16 15 19 19 C 1.38274 * 120.01520 * 359.74365 * 18 17 16 20 20 Cl 1.73605 * 120.02770 * 179.97438 * 19 18 17 21 21 C 1.38398 * 120.01030 * 79.99771 * 15 14 13 22 22 F 1.35099 * 120.02862 * 359.97438 * 21 15 14 23 23 H 1.08998 * 109.46881 * 298.55932 * 1 2 3 24 24 H 1.08998 * 109.47017 * 178.56330 * 1 2 3 25 25 H 1.08993 * 109.46878 * 58.55839 * 1 2 3 26 26 H 1.08996 * 109.47150 * 119.99906 * 2 1 3 27 27 H 1.08997 * 109.46921 * 239.99825 * 2 1 3 28 28 H 0.97004 * 119.99905 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99981 * 39.71434 * 13 3 2 30 30 H 1.09005 * 109.47061 * 296.22799 * 14 13 3 31 31 H 1.08997 * 109.47274 * 56.23314 * 14 13 3 32 32 H 1.07995 * 119.97846 * 359.97438 * 16 15 14 33 33 H 1.07993 * 119.97503 * 180.25600 * 17 16 15 34 34 H 1.08005 * 119.99126 * 179.72662 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1939 1.1507 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3703 0.7037 2.6751 9 14 0.8652 2.6984 3.8714 10 1 -0.6128 2.6965 3.7274 11 1 1.2393 2.0415 5.1495 12 1 1.3607 4.0983 3.8712 13 7 1.6704 2.0926 -1.2644 14 6 2.6513 1.7942 -2.3163 15 6 2.1920 2.3994 -3.6178 16 6 1.5771 1.6073 -4.5694 17 6 1.1512 2.1623 -5.7615 18 6 1.3487 3.5083 -6.0085 19 6 1.9681 4.3018 -5.0605 20 17 2.2169 5.9918 -5.3704 21 6 2.3907 3.7469 -3.8629 22 9 2.9960 4.5207 -2.9355 23 1 -0.3633 0.4913 0.9026 24 1 -0.3633 -1.0273 -0.0258 25 1 -0.3633 0.5360 -0.8767 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.5171 0.4029 3.5855 29 1 0.7406 1.8246 -1.5504 30 1 3.6184 2.2152 -2.0412 31 1 2.7443 0.7142 -2.4305 32 1 1.4265 0.5548 -4.3800 33 1 0.6673 1.5433 -6.5025 34 1 1.0195 3.9399 -6.9421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164869037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = -49.779092 kcal Electronic energy + Delta-G solvation = -18470.615700 eV Core-core repulsion = 15342.713151 eV Total energy + Delta-G solvation = -3127.902550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.88720 -40.25157 -38.33384 -37.50542 -34.86347 -33.14319 -31.42136 -31.12865 -28.41647 -26.12761 -25.03497 -23.75644 -22.56524 -21.18980 -18.76375 -18.18407 -17.72955 -17.11837 -16.86605 -16.61878 -16.07568 -15.45840 -15.38905 -14.77972 -14.44198 -14.34875 -14.02589 -13.97602 -13.82380 -13.56088 -12.90153 -12.78906 -12.62837 -12.45591 -12.40225 -12.33153 -12.00860 -11.79536 -11.62457 -11.39672 -10.99539 -10.42981 -9.87831 -9.65591 -8.95043 -8.05712 -6.13708 -0.00083 0.08627 0.99580 1.42934 1.44368 1.51618 2.42730 2.49249 3.15720 3.23195 3.53041 3.76689 3.94436 4.13652 4.22137 4.34153 4.55834 4.60979 4.63357 4.74784 4.79874 4.98614 5.01229 5.12008 5.22250 5.32344 5.38045 5.44133 5.70658 5.75170 5.76087 5.83782 6.31555 6.65571 6.82398 6.97836 7.53705 8.99386 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.004834 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.501122 B = 5791.006190 C = 6513.759667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C 0.222 3.778 4 H -0.004 1.004 5 C -0.502 4.502 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.280 1.280 13 N -0.684 5.684 14 C 0.102 3.898 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.103 4.103 18 C -0.081 4.081 19 C -0.088 4.088 20 Cl -0.060 7.060 21 C 0.099 3.901 22 F -0.142 7.142 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 1.135 -19.486 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.540 4.540 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.315 5.315 14 C -0.027 4.027 15 C -0.116 4.116 16 C -0.099 4.099 17 C -0.121 4.121 18 C -0.099 4.099 19 C -0.116 4.116 20 Cl -0.032 7.032 21 C 0.079 3.921 22 F -0.120 7.120 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.175 0.825 33 H 0.197 0.803 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.860 1.824 -19.140 19.439 hybrid contribution 0.062 0.015 1.350 1.351 sum -2.798 1.839 -17.791 18.103 Atomic orbital electron populations 1.21447 0.95858 0.99449 1.00826 1.21932 0.96550 0.99497 0.99681 1.18957 0.93655 0.89837 0.86194 0.98622 1.21218 1.30460 1.11334 0.91038 0.93410 1.25543 0.95974 0.95900 1.00789 1.69997 1.40044 1.25155 1.20720 0.85751 0.79152 0.78663 0.78880 1.19552 1.21003 1.20574 1.60758 1.04651 1.63309 1.02811 1.20712 0.96118 0.97784 0.88079 1.20032 1.02139 0.91649 0.97750 1.21418 0.94913 1.01041 0.92485 1.21573 0.98923 0.94209 0.97399 1.21360 0.96263 0.93677 0.98632 1.21207 1.07209 0.87179 0.96002 1.98368 1.95694 1.13668 1.95428 1.17640 0.98613 0.89277 0.86592 1.91503 1.80706 1.74730 1.65072 0.94274 0.93513 0.93199 0.92032 0.94899 0.93166 0.84600 0.92813 0.93228 0.82545 0.80284 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.39 71.98 0.68 -4.10 16 2 C -0.14 -6.21 5.50 30.60 0.17 -6.04 16 3 C 0.22 11.10 2.33 44.17 0.10 11.20 16 4 H 0.00 -0.24 7.86 -2.39 -0.02 -0.26 16 5 C -0.50 -27.78 7.35 25.60 0.19 -27.59 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.90 5.22 84.65 0.44 1.34 16 8 N -0.92 -52.64 11.39 21.45 0.24 -52.40 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.68 -28.97 6.24 -499.46 -3.12 -32.09 16 14 C 0.10 3.64 5.33 85.56 0.46 4.09 16 15 C -0.11 -3.33 5.36 -19.82 -0.11 -3.44 16 16 C -0.08 -1.63 9.67 22.27 0.22 -1.41 16 17 C -0.10 -1.53 10.04 22.27 0.22 -1.31 16 18 C -0.08 -1.40 9.83 22.28 0.22 -1.18 16 19 C -0.09 -2.23 6.33 22.36 0.14 -2.09 16 20 Cl -0.06 -1.49 28.62 -2.72 -0.08 -1.57 16 21 C 0.10 3.13 7.22 22.39 0.16 3.29 16 22 F -0.14 -5.42 16.24 44.97 0.73 -4.69 16 23 H 0.04 1.78 7.05 -2.39 -0.02 1.76 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.78 6.42 -2.39 -0.02 1.76 16 26 H 0.06 3.21 6.25 -2.39 -0.01 3.19 16 27 H 0.03 1.31 7.24 -2.39 -0.02 1.30 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 29 H 0.33 13.13 6.55 -89.69 -0.59 12.54 16 30 H 0.05 2.13 7.93 -2.38 -0.02 2.12 16 31 H 0.05 1.62 7.09 -2.39 -0.02 1.60 16 32 H 0.16 2.51 8.03 -2.91 -0.02 2.48 16 33 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -63.70 301.72 3.22 -60.48 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.53 Total: 10.99 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 2.89 Total: -27.24 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.87 Total: -84.49 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.73 Total: -4.69 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -63.70 3.22 -60.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164869037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.701 kcal (2) G-P(sol) polarization free energy of solvation -63.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds