Wall clock time and date at job start Mon Mar 30 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.38240 * 120.00261 * 259.71871 * 14 13 12 16 16 C 1.38224 * 120.04856 * 179.76680 * 15 14 13 17 17 C 1.38261 * 120.05897 * 0.51534 * 16 15 14 18 18 C 1.38280 * 120.01404 * 359.73998 * 17 16 15 19 19 Cl 1.73594 * 120.02358 * 179.97438 * 18 17 16 20 20 C 1.38399 * 120.01099 * 80.00048 * 14 13 12 21 21 F 1.35101 * 120.02652 * 359.97438 * 20 14 13 22 22 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 25 25 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 26 26 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 27 27 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 28 28 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 29 29 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 30 30 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 31 31 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 32 32 H 1.08003 * 119.97551 * 0.02562 * 15 14 13 33 33 H 1.07997 * 119.97039 * 180.25407 * 16 15 14 34 34 H 1.08000 * 119.99273 * 179.76709 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 6 7.9738 -5.4946 -0.0017 15 6 8.3895 -6.0878 1.1757 16 6 8.8109 -7.4042 1.1764 17 6 8.8274 -8.1267 -0.0024 18 6 8.4171 -7.5343 -1.1825 19 17 8.4383 -8.4409 -2.6628 20 6 7.9895 -6.2160 -1.1828 21 9 7.5883 -5.6355 -2.3349 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6809 0.8905 24 1 3.8752 -0.6798 -0.8895 25 1 3.6584 -3.1502 -0.8903 26 1 3.6578 -3.1506 0.8896 27 1 5.9149 -2.1230 0.8899 28 1 5.9148 -2.1228 -0.8900 29 1 5.6656 -4.5375 -0.7825 30 1 7.8868 -3.5564 -0.8899 31 1 7.8861 -3.5576 0.8901 32 1 8.3811 -5.5234 2.0965 33 1 9.1315 -7.8676 2.0977 34 1 9.1604 -9.1540 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165968678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:20 Heat of formation + Delta-G solvation = -61.816634 kcal Electronic energy + Delta-G solvation = -17498.343348 eV Core-core repulsion = 14369.918812 eV Total energy + Delta-G solvation = -3128.424537 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.07780 -40.26847 -37.99354 -37.43204 -35.54529 -33.85236 -31.99634 -31.39887 -28.74991 -26.14454 -23.88897 -23.68624 -22.61910 -21.78795 -18.94055 -18.72821 -17.87235 -17.25276 -16.96572 -16.66379 -16.38922 -15.54328 -15.50778 -15.42890 -14.86643 -14.63860 -14.42102 -14.02927 -13.78436 -13.48922 -13.31678 -12.93099 -12.59646 -12.51327 -12.45434 -12.36044 -11.95777 -11.80264 -11.54051 -11.47993 -11.28028 -10.76418 -9.96762 -9.73299 -9.42834 -8.29360 -6.34034 -0.04207 0.01228 0.95465 1.36442 1.38608 1.51015 2.36880 2.39685 3.03508 3.05864 3.26232 3.54972 3.80469 3.99941 4.18379 4.20637 4.26336 4.37054 4.56131 4.66442 4.67555 4.87468 4.90917 4.94893 4.96857 5.09738 5.20870 5.34353 5.49914 5.59884 5.66057 5.70235 5.98152 6.25713 6.30718 6.74438 7.30581 8.87827 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033837 B = 0.003083 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.296773 B = 9079.001564 C = 9398.260219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.092 4.092 11 C 0.069 3.931 12 N -0.688 5.688 13 C 0.098 3.902 14 C -0.111 4.111 15 C -0.069 4.069 16 C -0.106 4.106 17 C -0.084 4.084 18 C -0.089 4.089 19 Cl -0.061 7.061 20 C 0.085 3.915 21 F -0.143 7.143 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.337 0.663 30 H 0.038 0.962 31 H 0.107 0.893 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.338 -15.878 1.790 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.130 4.130 11 C -0.059 4.059 12 N -0.319 5.319 13 C -0.031 4.031 14 C -0.112 4.112 15 C -0.087 4.087 16 C -0.124 4.124 17 C -0.102 4.102 18 C -0.116 4.116 19 Cl -0.032 7.032 20 C 0.065 3.935 21 F -0.121 7.121 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.154 0.846 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.180 0.820 33 H 0.193 0.807 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 25.135 -15.886 2.292 29.823 hybrid contribution -0.478 0.942 -1.724 2.022 sum 24.657 -14.944 0.568 28.838 Atomic orbital electron populations 1.70089 1.08446 1.28220 1.52741 1.26107 0.95690 1.03819 0.94037 0.85571 0.79589 0.77761 0.79189 1.19265 1.20922 1.16534 1.21532 0.92375 0.93025 1.50411 0.95421 1.19484 0.93695 0.94892 0.96651 1.21272 0.94034 0.97048 1.00648 1.21936 0.94589 0.88550 1.00859 1.60602 1.07079 1.14163 1.50025 1.20880 0.87966 0.91505 1.02705 1.19954 1.02182 0.96978 0.92134 1.21439 0.94576 0.95575 0.97131 1.21624 0.98289 0.93563 0.98892 1.21365 0.97440 1.01845 0.89561 1.21206 1.08295 0.91605 0.90516 1.98383 1.97252 1.73623 1.33944 1.17645 1.02201 0.91105 0.82550 1.91492 1.88406 1.84381 1.47843 0.92486 0.95690 0.96383 0.94072 0.93005 0.90013 0.95090 0.84608 0.94387 0.87516 0.82033 0.80691 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 3 Si 0.96 44.72 27.47 68.60 1.88 46.61 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.54 -31.85 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.68 5.41 30.59 0.17 -3.51 16 11 C 0.07 2.13 5.69 86.30 0.49 2.62 16 12 N -0.69 -18.69 6.49 -517.93 -3.36 -22.06 16 13 C 0.10 2.08 5.54 85.56 0.47 2.56 16 14 C -0.11 -2.17 5.40 -19.83 -0.11 -2.28 16 15 C -0.07 -0.94 9.67 22.27 0.22 -0.72 16 16 C -0.11 -1.08 10.04 22.27 0.22 -0.85 16 17 C -0.08 -1.08 9.83 22.29 0.22 -0.86 16 18 C -0.09 -1.70 6.33 22.36 0.14 -1.56 16 19 Cl -0.06 -1.20 28.62 -2.72 -0.08 -1.28 16 20 C 0.09 1.92 7.22 22.39 0.16 2.08 16 21 F -0.14 -3.79 16.23 44.97 0.73 -3.06 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 24 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.34 9.66 8.72 -89.69 -0.78 8.88 16 30 H 0.04 0.85 7.94 -2.39 -0.02 0.83 16 31 H 0.11 1.87 8.00 -2.39 -0.02 1.85 16 32 H 0.16 1.50 8.04 -2.91 -0.02 1.48 16 33 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -69.90 310.26 2.56 -67.34 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.27 Total: 7.41 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 2.81 Total: -34.01 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.06 Total: -83.01 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.73 Total: -3.06 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -69.90 2.56 -67.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165968678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.523 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds