Wall clock time and date at job start Mon Mar 30 2020 01:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38224 * 119.98607 * 90.00249 * 15 14 13 17 17 C 1.38444 * 120.00367 * 179.97438 * 16 15 14 18 18 F 1.35108 * 120.01989 * 179.97438 * 17 16 15 19 19 C 1.38458 * 119.96343 * 359.97438 * 17 16 15 20 20 C 1.38291 * 119.96202 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.00454 * 179.97438 * 20 19 17 22 22 C 1.38209 * 119.97958 * 269.71955 * 15 14 13 23 23 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 24 24 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 25 25 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 26 26 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 27 27 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 28 28 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 29 29 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 30 30 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 31 31 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 32 32 H 1.08001 * 119.99696 * 359.94562 * 16 15 14 33 33 H 1.08000 * 120.02227 * 179.97438 * 19 17 16 34 34 H 1.08002 * 119.98122 * 0.02783 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7965 3.7428 -3.8157 17 6 2.4712 4.4644 -4.9516 18 9 3.0490 5.6644 -5.1786 19 6 1.5533 3.9557 -5.8548 20 6 0.9629 2.7271 -5.6215 21 17 -0.1886 2.0885 -6.7529 22 6 1.2921 2.0054 -4.4875 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3633 -1.0237 0.0898 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.0722 0.4283 1.9219 29 1 0.6931 1.8857 -1.4926 30 1 3.5861 1.9537 -2.0570 31 1 2.4645 0.6641 -2.5543 32 1 3.5124 4.1391 -3.1108 33 1 1.2985 4.5180 -6.7409 34 1 0.8333 1.0444 -4.3073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168259170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:17 Heat of formation + Delta-G solvation = -40.818185 kcal Electronic energy + Delta-G solvation = -18157.151913 eV Core-core repulsion = 15029.637938 eV Total energy + Delta-G solvation = -3127.513975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.00663 -39.42254 -37.03497 -36.47542 -33.39694 -31.45516 -30.53072 -29.93025 -26.47716 -24.39951 -23.62516 -22.89298 -21.47007 -19.58621 -17.63309 -16.84369 -16.64032 -16.33261 -15.74202 -15.16021 -14.71201 -14.19095 -13.78219 -13.68627 -13.40891 -13.29630 -13.06610 -12.59243 -12.23695 -11.97759 -11.81554 -11.36772 -11.30761 -11.18419 -10.98283 -10.78437 -10.32359 -10.16145 -10.08211 -9.92659 -8.98861 -8.80682 -8.68207 -8.27867 -7.45915 -6.33135 -4.03652 0.91461 0.96614 1.84984 3.32924 3.44959 3.45704 3.64521 4.10862 4.49384 4.54626 4.82463 4.86443 5.13212 5.17230 5.34939 5.43395 5.57877 5.76158 5.88536 5.96575 5.99532 6.03549 6.09089 6.25868 6.41655 6.60599 6.64083 6.90122 6.96344 7.16640 7.25867 7.79696 8.17953 8.34280 8.58883 8.88621 9.64687 11.03032 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022784 B = 0.004380 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.654387 B = 6391.201435 C = 7035.209090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.029 0.971 5 C -0.572 4.572 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.090 3.910 15 C -0.023 4.023 16 C -0.127 4.127 17 C 0.111 3.889 18 F -0.135 7.135 19 C -0.157 4.157 20 C -0.007 4.007 21 Cl -0.065 7.065 22 C -0.118 4.118 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.269 0.731 29 H 0.331 0.669 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 1.936 -16.288 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.096 3.904 4 H 0.046 0.954 5 C -0.610 4.610 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.300 5.300 14 C -0.039 4.039 15 C -0.024 4.024 16 C -0.146 4.146 17 C 0.091 3.909 18 F -0.114 7.114 19 C -0.176 4.176 20 C -0.034 4.034 21 Cl -0.036 7.036 22 C -0.137 4.137 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.112 2.587 -14.572 14.949 hybrid contribution -0.286 -0.856 -2.096 2.282 sum -2.397 1.731 -16.667 16.927 Atomic orbital electron populations 1.21598 0.96695 0.99219 1.01439 1.22279 0.96258 1.01331 0.99539 1.19385 0.95788 0.88448 0.86788 0.95363 1.21783 1.30146 1.18143 0.90963 0.92640 1.25708 0.95737 0.97042 0.99997 1.70824 1.24502 1.24422 1.35577 0.83565 0.75543 0.75619 0.75739 1.20971 1.21499 1.21522 1.60834 1.04879 1.62351 1.01974 1.20967 0.99041 0.95252 0.88652 1.19828 0.93575 0.93820 0.95145 1.21203 1.02233 0.94878 0.96328 1.17433 0.95438 0.82343 0.95662 1.91519 1.82803 1.42455 1.94580 1.20853 0.99144 0.96277 1.01358 1.20502 0.95266 0.94690 0.92946 1.98375 1.58430 1.86302 1.60470 1.21053 0.98805 1.00959 0.92892 0.90793 0.94900 0.95272 0.95997 0.91369 0.91959 0.85029 0.90139 0.94614 0.83788 0.84025 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.38 37.16 0.35 -2.27 16 2 C -0.15 -3.31 5.45 -26.73 -0.15 -3.46 16 3 C 0.20 4.73 1.95 -68.86 -0.13 4.60 16 4 H 0.03 0.72 7.32 -51.93 -0.38 0.35 16 5 C -0.57 -15.08 7.18 -34.44 -0.25 -15.33 16 6 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 7 C 0.02 0.51 5.29 -17.82 -0.09 0.42 16 8 N -0.92 -26.32 13.21 55.43 0.73 -25.58 16 9 Si 1.07 24.54 29.91 -169.99 -5.08 19.46 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.67 -13.18 6.18 -109.22 -0.67 -13.86 16 14 C 0.09 1.45 5.60 -4.98 -0.03 1.42 16 15 C -0.02 -0.32 5.43 -104.64 -0.57 -0.89 16 16 C -0.13 -1.74 9.68 -39.51 -0.38 -2.12 16 17 C 0.11 1.43 7.30 -39.42 -0.29 1.15 16 18 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 19 C -0.16 -1.84 9.81 -39.48 -0.39 -2.23 16 20 C -0.01 -0.09 6.32 -39.51 -0.25 -0.34 16 21 Cl -0.06 -0.70 28.96 -51.86 -1.50 -2.20 16 22 C -0.12 -1.50 9.48 -39.54 -0.37 -1.87 16 23 H 0.07 1.64 6.88 -51.93 -0.36 1.28 16 24 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 27 H 0.07 1.63 6.17 -51.93 -0.32 1.31 16 28 H 0.27 7.62 5.62 -40.82 -0.23 7.39 16 29 H 0.33 6.30 6.79 -39.29 -0.27 6.03 16 30 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 31 H 0.04 0.55 7.14 -51.93 -0.37 0.18 16 32 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -27.50 301.47 -8.45 -35.95 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.95 Total: 4.35 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.55 Total: -20.92 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.06 Total: -39.44 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.50 -8.45 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168259170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.867 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds