Wall clock time and date at job start Mon Mar 30 2020 01:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38224 * 119.98607 * 90.00249 * 15 14 13 17 17 C 1.38444 * 120.00367 * 179.97438 * 16 15 14 18 18 F 1.35108 * 120.01989 * 179.97438 * 17 16 15 19 19 C 1.38458 * 119.96343 * 359.97438 * 17 16 15 20 20 C 1.38291 * 119.96202 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.00454 * 179.97438 * 20 19 17 22 22 C 1.38209 * 119.97958 * 269.71955 * 15 14 13 23 23 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 24 24 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 25 25 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 26 26 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 27 27 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 28 28 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 29 29 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 30 30 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 31 31 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 32 32 H 1.08001 * 119.99696 * 359.94562 * 16 15 14 33 33 H 1.08000 * 120.02227 * 179.97438 * 19 17 16 34 34 H 1.08002 * 119.98122 * 0.02783 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7965 3.7428 -3.8157 17 6 2.4712 4.4644 -4.9516 18 9 3.0490 5.6644 -5.1786 19 6 1.5533 3.9557 -5.8548 20 6 0.9629 2.7271 -5.6215 21 17 -0.1886 2.0885 -6.7529 22 6 1.2921 2.0054 -4.4875 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3633 -1.0237 0.0898 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.0722 0.4283 1.9219 29 1 0.6931 1.8857 -1.4926 30 1 3.5861 1.9537 -2.0570 31 1 2.4645 0.6641 -2.5543 32 1 3.5124 4.1391 -3.1108 33 1 1.2985 4.5180 -6.7409 34 1 0.8333 1.0444 -4.3073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168259170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:17 Heat of formation + Delta-G solvation = -55.328210 kcal Electronic energy + Delta-G solvation = -18157.781115 eV Core-core repulsion = 15029.637938 eV Total energy + Delta-G solvation = -3128.143177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.02741 -40.48555 -38.55051 -37.53657 -34.98830 -33.11987 -31.56168 -31.31665 -28.13433 -26.01895 -25.36303 -23.89967 -22.62947 -21.37655 -19.02979 -18.35699 -17.77751 -17.32269 -16.80192 -16.56425 -15.99072 -15.70588 -15.49343 -15.19904 -14.62101 -14.55517 -14.41479 -14.00972 -13.66435 -13.42285 -13.06831 -12.95628 -12.59035 -12.41168 -12.30527 -12.11752 -11.97729 -11.88440 -11.86896 -11.65594 -10.64891 -10.33882 -9.99414 -9.80007 -9.05884 -8.47281 -6.18098 -0.09142 -0.04743 0.92266 1.57892 1.63935 1.82890 2.29514 2.62526 3.08721 3.28739 3.43034 3.77200 3.82241 3.91521 4.10684 4.20740 4.33853 4.37350 4.44928 4.54950 4.64680 4.79200 4.90434 4.95439 4.98014 5.12417 5.23700 5.33908 5.41718 5.58501 5.61491 5.96506 6.23830 6.55246 6.72586 6.81389 7.57323 8.89550 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022784 B = 0.004380 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.654387 B = 6391.201435 C = 7035.209090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.146 4.146 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.027 4.027 8 N -0.943 5.943 9 Si 1.106 2.894 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.096 3.904 15 C -0.033 4.033 16 C -0.136 4.136 17 C 0.104 3.896 18 F -0.138 7.138 19 C -0.146 4.146 20 C -0.009 4.009 21 Cl -0.049 7.049 22 C -0.113 4.113 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.260 0.740 29 H 0.337 0.663 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 2.060 -17.929 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.099 3.901 4 H 0.016 0.984 5 C -0.613 4.613 6 H 0.063 0.937 7 C -0.225 4.225 8 N -0.582 5.582 9 Si 0.930 3.070 10 H -0.215 1.215 11 H -0.204 1.204 12 H -0.197 1.197 13 N -0.307 5.307 14 C -0.033 4.033 15 C -0.034 4.034 16 C -0.155 4.155 17 C 0.085 3.915 18 F -0.116 7.116 19 C -0.165 4.165 20 C -0.036 4.036 21 Cl -0.020 7.020 22 C -0.133 4.133 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.502 2.716 -16.246 16.840 hybrid contribution 0.146 -0.876 -1.718 1.934 sum -3.357 1.839 -17.964 18.367 Atomic orbital electron populations 1.21510 0.95106 1.00225 1.01432 1.22129 0.97570 0.99775 0.99145 1.19136 0.93686 0.89526 0.87743 0.98425 1.22050 1.29352 1.17672 0.92238 0.93746 1.26875 0.95751 0.97088 1.02777 1.70919 1.26101 1.25854 1.35302 0.83042 0.75608 0.75308 0.73011 1.21490 1.20417 1.19690 1.60653 1.05765 1.62390 1.01932 1.20891 0.97766 0.96303 0.88359 1.19557 0.94977 0.93993 0.94869 1.21227 1.02409 0.95091 0.96805 1.17458 0.95958 0.82323 0.95784 1.91513 1.82950 1.42596 1.94577 1.21084 0.97859 0.96116 1.01459 1.20534 0.95403 0.94643 0.92977 1.98386 1.57747 1.86101 1.59777 1.21151 0.98050 1.01390 0.92677 0.93491 0.92635 0.93255 0.93699 0.94351 0.92919 0.84422 0.91086 0.93438 0.84332 0.81852 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.38 71.98 0.68 -4.10 16 2 C -0.15 -6.23 5.45 30.59 0.17 -6.06 16 3 C 0.21 9.75 1.95 44.17 0.09 9.84 16 4 H 0.00 -0.11 7.32 -2.39 -0.02 -0.13 16 5 C -0.57 -30.63 7.18 25.60 0.18 -30.44 16 6 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 7 C -0.03 -1.47 5.29 84.65 0.45 -1.02 16 8 N -0.94 -55.38 13.21 21.44 0.28 -55.10 16 9 Si 1.11 49.53 29.91 68.60 2.05 51.59 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 N -0.68 -26.26 6.18 -499.47 -3.09 -29.35 16 14 C 0.10 3.01 5.60 85.56 0.48 3.49 16 15 C -0.03 -0.88 5.43 -19.88 -0.11 -0.99 16 16 C -0.14 -3.62 9.68 22.32 0.22 -3.40 16 17 C 0.10 2.54 7.30 22.37 0.16 2.70 16 18 F -0.14 -3.46 17.27 44.97 0.78 -2.68 16 19 C -0.15 -3.05 9.81 22.33 0.22 -2.83 16 20 C -0.01 -0.18 6.32 22.32 0.14 -0.04 16 21 Cl -0.05 -0.91 28.96 -2.72 -0.08 -0.99 16 22 C -0.11 -2.62 9.48 22.30 0.21 -2.41 16 23 H 0.05 2.03 6.88 -2.39 -0.02 2.02 16 24 H 0.05 1.83 6.68 -2.39 -0.02 1.82 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.04 1.68 7.13 -2.39 -0.02 1.66 16 27 H 0.04 1.86 6.17 -2.39 -0.01 1.84 16 28 H 0.26 15.26 5.62 -92.71 -0.52 14.73 16 29 H 0.34 12.31 6.79 -89.69 -0.61 11.70 16 30 H 0.07 2.34 7.89 -2.39 -0.02 2.33 16 31 H 0.05 1.38 7.14 -2.39 -0.02 1.37 16 32 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -58.83 301.47 3.59 -55.24 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.76 Total: 16.58 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 2.88 Total: -35.28 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.80 Total: -84.45 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.59 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -58.83 3.59 -55.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168259170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.091 kcal (2) G-P(sol) polarization free energy of solvation -58.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds