Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47413 * 2 1 4 4 C 1.50700 * 109.46968 * 120.00104 * 2 1 3 5 5 H 1.08005 * 119.99476 * 119.99802 * 4 2 1 6 6 C 1.37872 * 120.00369 * 299.99565 * 4 2 1 7 7 N 1.31520 * 119.99713 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00337 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47009 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47206 * 120.00046 * 8 6 4 11 11 H 1.48503 * 109.47216 * 240.00201 * 8 6 4 12 12 N 1.46898 * 109.46750 * 240.00017 * 2 1 3 13 13 C 1.46900 * 111.00123 * 306.04579 * 12 2 1 14 14 C 1.46896 * 111.00329 * 70.00093 * 12 2 1 15 15 C 1.50702 * 109.47588 * 169.99988 * 14 12 2 16 16 C 1.38225 * 119.99682 * 259.72918 * 15 14 12 17 17 C 1.38207 * 120.03874 * 180.27545 * 16 15 14 18 18 C 1.38387 * 120.03471 * 359.97438 * 17 16 15 19 19 Cl 1.73597 * 119.99916 * 180.02562 * 18 17 16 20 20 C 1.38297 * 120.00050 * 359.97438 * 18 17 16 21 21 C 1.38445 * 120.00118 * 79.99918 * 15 14 12 22 22 F 1.35102 * 120.01557 * 359.74602 * 21 15 14 23 23 H 1.09004 * 109.46901 * 59.99627 * 1 2 3 24 24 H 1.09000 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46545 * 300.00283 * 1 2 3 26 26 H 0.97000 * 119.99673 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47466 * 183.95492 * 13 12 2 28 28 H 1.09003 * 109.47690 * 303.95682 * 13 12 2 29 29 H 1.09004 * 109.47151 * 63.96023 * 13 12 2 30 30 H 1.09005 * 109.47014 * 49.99853 * 14 12 2 31 31 H 1.08998 * 109.47292 * 289.99841 * 14 12 2 32 32 H 1.08002 * 119.98389 * 0.24967 * 16 15 14 33 33 H 1.08000 * 119.98415 * 179.97438 * 17 16 15 34 34 H 1.07993 * 120.01533 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1474 -2.2865 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5795 16 6 3.6726 0.0255 -4.0135 17 6 4.3348 -0.5330 -5.0904 18 6 3.8021 -1.6357 -5.7351 19 17 4.6350 -2.3368 -7.0872 20 6 2.6069 -2.1797 -5.3014 21 6 1.9428 -1.6192 -4.2235 22 9 0.7744 -2.1488 -3.7997 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 0.7083 1.1608 3.4844 27 1 1.8663 -2.5521 -2.1649 28 1 1.6465 -2.5988 -0.3991 29 1 0.3555 -1.9520 -1.4400 30 1 2.1025 1.1189 -2.2604 31 1 0.6814 0.1053 -2.6087 32 1 4.0891 0.8860 -3.5111 33 1 5.2684 -0.1087 -5.4291 34 1 2.1912 -3.0404 -5.8040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169177907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -17.983205 kcal Electronic energy + Delta-G solvation = -18676.396985 eV Core-core repulsion = 15549.873209 eV Total energy + Delta-G solvation = -3126.523776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.93154 -39.30344 -37.23908 -36.43673 -33.05668 -31.39807 -30.64944 -28.43225 -26.62983 -25.23186 -23.93402 -22.88890 -21.33140 -19.23263 -17.74896 -16.66519 -16.35670 -16.07933 -15.71566 -14.95370 -14.54554 -14.09284 -13.79885 -13.64206 -13.42732 -13.30003 -12.83052 -12.55943 -11.95834 -11.66671 -11.41128 -11.29307 -11.13303 -10.97535 -10.90807 -10.71632 -10.62913 -10.45474 -10.04284 -9.85799 -9.02883 -8.91020 -8.57658 -8.39892 -7.20490 -6.02204 -4.05652 0.97060 1.07564 1.90768 3.29779 3.37652 3.40404 3.43556 4.27928 4.41320 4.62941 4.82078 4.86267 5.16880 5.20246 5.30608 5.46785 5.69858 5.87824 5.96943 6.05365 6.10356 6.21353 6.35665 6.49258 6.65111 6.72685 6.82401 6.89936 7.09169 7.41338 7.68926 7.82048 8.07952 8.34017 8.54850 9.00397 9.59412 11.04951 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033810 B = 0.004229 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.946968 B = 6619.406076 C = 6805.451081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.527 5.527 13 C 0.029 3.971 14 C 0.086 3.914 15 C -0.086 4.086 16 C -0.065 4.065 17 C -0.121 4.121 18 C -0.017 4.017 19 Cl -0.069 7.069 20 C -0.150 4.150 21 C 0.116 3.884 22 F -0.127 7.127 23 H 0.006 0.994 24 H 0.032 0.968 25 H 0.089 0.911 26 H 0.259 0.741 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -2.752 -16.394 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.251 5.251 13 C -0.119 4.119 14 C -0.042 4.042 15 C -0.087 4.087 16 C -0.084 4.084 17 C -0.140 4.140 18 C -0.044 4.044 19 Cl -0.041 7.041 20 C -0.170 4.170 21 C 0.096 3.904 22 F -0.106 7.106 23 H 0.025 0.975 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.491 -2.772 -16.287 17.121 hybrid contribution -0.792 -0.567 0.745 1.226 sum 3.699 -3.338 -15.542 16.321 Atomic orbital electron populations 1.22412 1.00711 0.99562 1.00488 1.19358 0.89884 0.94484 0.85827 0.94253 1.21125 1.30439 1.12457 0.89508 0.91890 1.24922 0.95240 0.95147 0.98998 1.69895 1.37130 1.23133 1.23307 0.86462 0.78537 0.79679 0.82864 1.19737 1.21052 1.21188 1.62472 1.58822 1.02439 1.01333 1.22480 0.96522 0.91656 1.01266 1.21020 0.96845 0.97710 0.88632 1.20268 0.96313 0.94844 0.97300 1.20948 0.92914 0.99804 0.94702 1.21083 1.00993 0.95421 0.96473 1.20509 0.94443 0.96849 0.92639 1.98366 1.77774 1.83846 1.44069 1.20872 0.95563 1.02450 0.98075 1.17313 0.83767 0.94353 0.94937 1.91534 1.44937 1.85243 1.88871 0.97490 0.94897 0.89268 0.93063 0.93717 0.91036 0.95929 0.89842 0.94035 0.83816 0.84471 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.22 37.16 0.31 -3.84 16 2 C 0.21 5.19 2.31 -68.86 -0.16 5.03 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.46 7.91 -34.44 -0.27 -13.73 16 5 H 0.06 1.73 7.12 -52.48 -0.37 1.36 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.53 -11.19 4.69 -237.72 -1.12 -12.30 16 13 C 0.03 0.59 7.23 60.06 0.43 1.03 16 14 C 0.09 1.52 4.57 -4.98 -0.02 1.50 16 15 C -0.09 -1.29 5.16 -104.55 -0.54 -1.83 16 16 C -0.06 -0.82 9.67 -39.60 -0.38 -1.20 16 17 C -0.12 -1.35 9.83 -39.54 -0.39 -1.74 16 18 C -0.02 -0.20 6.32 -39.50 -0.25 -0.45 16 19 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 20 C -0.15 -1.88 9.81 -39.48 -0.39 -2.27 16 21 C 0.12 1.71 5.89 -39.43 -0.23 1.48 16 22 F -0.13 -2.04 13.79 2.25 0.03 -2.00 16 23 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 24 H 0.03 0.77 6.42 -51.93 -0.33 0.44 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.04 0.83 5.06 -51.93 -0.26 0.56 16 28 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 29 H 0.02 0.46 6.13 -51.93 -0.32 0.14 16 30 H 0.08 1.40 7.79 -51.93 -0.40 1.00 16 31 H 0.04 0.76 6.86 -51.93 -0.36 0.40 16 32 H 0.14 1.59 8.04 -52.49 -0.42 1.17 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 291.34 15.07 4.39 4.39 Total: -1.00 -27.96 291.34 -8.47 -36.43 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.89 Total: -1.39 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.99 Total: -14.56 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.49 Total: -36.86 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.96 -8.47 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169177907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.446 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds