Wall clock time and date at job start Mon Mar 30 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47413 * 2 1 4 4 C 1.50700 * 109.46968 * 120.00104 * 2 1 3 5 5 H 1.08005 * 119.99476 * 119.99802 * 4 2 1 6 6 C 1.37872 * 120.00369 * 299.99565 * 4 2 1 7 7 N 1.31520 * 119.99713 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00337 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47009 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47206 * 120.00046 * 8 6 4 11 11 H 1.48503 * 109.47216 * 240.00201 * 8 6 4 12 12 N 1.46898 * 109.46750 * 240.00017 * 2 1 3 13 13 C 1.46900 * 111.00123 * 306.04579 * 12 2 1 14 14 C 1.46896 * 111.00329 * 70.00093 * 12 2 1 15 15 C 1.50702 * 109.47588 * 169.99988 * 14 12 2 16 16 C 1.38225 * 119.99682 * 259.72918 * 15 14 12 17 17 C 1.38207 * 120.03874 * 180.27545 * 16 15 14 18 18 C 1.38387 * 120.03471 * 359.97438 * 17 16 15 19 19 Cl 1.73597 * 119.99916 * 180.02562 * 18 17 16 20 20 C 1.38297 * 120.00050 * 359.97438 * 18 17 16 21 21 C 1.38445 * 120.00118 * 79.99918 * 15 14 12 22 22 F 1.35102 * 120.01557 * 359.74602 * 21 15 14 23 23 H 1.09004 * 109.46901 * 59.99627 * 1 2 3 24 24 H 1.09000 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46545 * 300.00283 * 1 2 3 26 26 H 0.97000 * 119.99673 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47466 * 183.95492 * 13 12 2 28 28 H 1.09003 * 109.47690 * 303.95682 * 13 12 2 29 29 H 1.09004 * 109.47151 * 63.96023 * 13 12 2 30 30 H 1.09005 * 109.47014 * 49.99853 * 14 12 2 31 31 H 1.08998 * 109.47292 * 289.99841 * 14 12 2 32 32 H 1.08002 * 119.98389 * 0.24967 * 16 15 14 33 33 H 1.08000 * 119.98415 * 179.97438 * 17 16 15 34 34 H 1.07993 * 120.01533 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1474 -2.2865 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5795 16 6 3.6726 0.0255 -4.0135 17 6 4.3348 -0.5330 -5.0904 18 6 3.8021 -1.6357 -5.7351 19 17 4.6350 -2.3368 -7.0872 20 6 2.6069 -2.1797 -5.3014 21 6 1.9428 -1.6192 -4.2235 22 9 0.7744 -2.1488 -3.7997 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 0.7083 1.1608 3.4844 27 1 1.8663 -2.5521 -2.1649 28 1 1.6465 -2.5988 -0.3991 29 1 0.3555 -1.9520 -1.4400 30 1 2.1025 1.1189 -2.2604 31 1 0.6814 0.1053 -2.6087 32 1 4.0891 0.8860 -3.5111 33 1 5.2684 -0.1087 -5.4291 34 1 2.1912 -3.0404 -5.8040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169177907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:37 Heat of formation + Delta-G solvation = -33.302840 kcal Electronic energy + Delta-G solvation = -18677.061295 eV Core-core repulsion = 15549.873209 eV Total energy + Delta-G solvation = -3127.188086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.09016 -40.39230 -38.76972 -37.43906 -34.91627 -32.77364 -31.69445 -30.20485 -28.10183 -27.26790 -25.45813 -23.92045 -22.63775 -20.98451 -18.81959 -18.27918 -17.73233 -17.46728 -16.94101 -16.62524 -15.82032 -15.71003 -15.22752 -14.99829 -14.66150 -14.39577 -14.28722 -14.16177 -13.47809 -13.17045 -12.94904 -12.72015 -12.67196 -12.42034 -12.41344 -12.19222 -12.15470 -12.00261 -11.98962 -11.66470 -10.93627 -10.49001 -9.99112 -9.65535 -8.90545 -8.10292 -6.20702 -0.06026 0.09224 0.99743 1.42020 1.44353 1.55865 2.37118 2.46050 3.19012 3.23099 3.45533 3.64770 3.75248 3.94553 4.13876 4.43035 4.49029 4.54371 4.63668 4.74739 4.79978 4.83367 4.92004 4.99173 5.10520 5.12610 5.15260 5.35731 5.49734 5.69360 5.69731 5.77619 6.17788 6.43085 6.67362 6.91370 7.48269 8.95893 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033810 B = 0.004229 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.946968 B = 6619.406076 C = 6805.451081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.015 0.985 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.534 5.534 13 C 0.040 3.960 14 C 0.090 3.910 15 C -0.106 4.106 16 C -0.064 4.064 17 C -0.110 4.110 18 C -0.017 4.017 19 Cl -0.052 7.052 20 C -0.147 4.147 21 C 0.098 3.902 22 F -0.141 7.141 23 H 0.023 0.977 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.261 0.739 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -3.298 -17.664 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.033 0.967 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.258 5.258 13 C -0.108 4.108 14 C -0.038 4.038 15 C -0.107 4.107 16 C -0.082 4.082 17 C -0.129 4.129 18 C -0.044 4.044 19 Cl -0.023 7.023 20 C -0.167 4.167 21 C 0.078 3.922 22 F -0.119 7.119 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.850 -3.323 -17.579 18.823 hybrid contribution -1.157 -0.395 1.004 1.582 sum 4.693 -3.718 -16.575 17.623 Atomic orbital electron populations 1.22216 1.00440 0.99113 1.00011 1.19121 0.89944 0.93223 0.86927 0.96694 1.21360 1.30486 1.12359 0.90851 0.92790 1.25649 0.95404 0.95807 1.01700 1.70010 1.37878 1.24176 1.23953 0.85506 0.78040 0.78655 0.79413 1.19423 1.20538 1.20806 1.62350 1.58822 1.02889 1.01703 1.22372 0.96287 0.91200 1.00964 1.20976 0.96916 0.97749 0.88151 1.20108 0.97569 0.95914 0.97123 1.21137 0.91979 1.00082 0.95050 1.21378 1.01524 0.94678 0.95288 1.20664 0.94118 0.96738 0.92842 1.98379 1.77279 1.83591 1.43095 1.21019 0.95659 1.02691 0.97296 1.17507 0.83824 0.94837 0.96052 1.91493 1.45759 1.85484 1.89176 0.95771 0.95194 0.91789 0.92959 0.91833 0.92996 0.96382 0.89414 0.94902 0.82405 0.81603 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.75 8.22 71.98 0.59 -7.16 16 2 C 0.21 10.81 2.31 44.17 0.10 10.91 16 3 H 0.02 0.83 7.93 -2.39 -0.02 0.81 16 4 C -0.51 -28.14 7.91 25.60 0.20 -27.94 16 5 H 0.05 3.00 7.12 -2.91 -0.02 2.98 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.20 16 8 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 N -0.53 -22.82 4.69 -906.03 -4.25 -27.07 16 13 C 0.04 1.63 7.23 127.69 0.92 2.56 16 14 C 0.09 3.16 4.57 85.56 0.39 3.55 16 15 C -0.11 -3.07 5.16 -19.82 -0.10 -3.18 16 16 C -0.06 -1.48 9.67 22.26 0.22 -1.26 16 17 C -0.11 -2.12 9.83 22.30 0.22 -1.90 16 18 C -0.02 -0.34 6.32 22.32 0.14 -0.20 16 19 Cl -0.05 -0.93 28.96 -2.72 -0.08 -1.00 16 20 C -0.15 -3.39 9.81 22.34 0.22 -3.17 16 21 C 0.10 2.76 5.89 22.37 0.13 2.89 16 22 F -0.14 -4.43 13.79 44.97 0.62 -3.81 16 23 H 0.02 1.05 6.91 -2.39 -0.02 1.03 16 24 H 0.03 1.43 6.42 -2.39 -0.02 1.41 16 25 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 26 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.06 2.34 5.06 -2.39 -0.01 2.32 16 28 H 0.05 2.28 6.76 -2.39 -0.02 2.27 16 29 H 0.02 0.74 6.13 -2.38 -0.01 0.72 16 30 H 0.09 2.95 7.79 -2.38 -0.02 2.93 16 31 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 32 H 0.16 3.14 8.04 -2.91 -0.02 3.11 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -59.51 291.34 3.16 -56.35 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.12 Total: 5.74 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 3.48 Total: -23.74 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -4.01 Total: -79.27 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.62 Total: -3.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.00 kcal Total: -59.51 3.16 -56.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169177907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.049 kcal (2) G-P(sol) polarization free energy of solvation -59.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds