Wall clock time and date at job start Mon Mar 30 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47282 * 2 1 4 4 C 1.50697 * 109.47206 * 239.99652 * 2 1 3 5 5 H 1.08001 * 120.00169 * 354.96328 * 4 2 1 6 6 C 1.37876 * 119.99861 * 174.96034 * 4 2 1 7 7 N 1.31521 * 119.99694 * 178.96014 * 6 4 2 8 8 Si 1.86795 * 120.00381 * 358.96191 * 6 4 2 9 9 H 1.48497 * 109.47237 * 85.19393 * 8 6 4 10 10 H 1.48497 * 109.47103 * 205.19861 * 8 6 4 11 11 H 1.48500 * 109.46838 * 325.19602 * 8 6 4 12 12 N 1.46905 * 109.46919 * 119.99633 * 2 1 3 13 13 C 1.46894 * 110.99749 * 58.95651 * 12 2 1 14 14 C 1.46900 * 110.99972 * 294.99876 * 12 2 1 15 15 C 1.50704 * 109.46900 * 190.00098 * 14 12 2 16 16 C 1.38226 * 119.99774 * 259.72928 * 15 14 12 17 17 C 1.38204 * 120.03440 * 179.72792 * 16 15 14 18 18 C 1.38389 * 120.03912 * 0.54567 * 17 16 15 19 19 Cl 1.73600 * 119.99988 * 179.74944 * 18 17 16 20 20 C 1.38292 * 119.99569 * 359.72536 * 18 17 16 21 21 C 1.38447 * 119.99880 * 80.00250 * 15 14 12 22 22 F 1.35097 * 120.01920 * 0.02562 * 21 15 14 23 23 H 1.09008 * 109.47370 * 294.63682 * 1 2 3 24 24 H 1.09004 * 109.47017 * 54.63299 * 1 2 3 25 25 H 1.08996 * 109.47026 * 174.63737 * 1 2 3 26 26 H 0.97000 * 119.99648 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47150 * 296.04430 * 13 12 2 28 28 H 1.08994 * 109.47413 * 56.04751 * 13 12 2 29 29 H 1.09000 * 109.46998 * 176.04690 * 13 12 2 30 30 H 1.09001 * 109.47201 * 310.00107 * 14 12 2 31 31 H 1.09003 * 109.46966 * 70.00360 * 14 12 2 32 32 H 1.08001 * 119.98000 * 359.97438 * 16 15 14 33 33 H 1.07996 * 119.97771 * 180.25317 * 17 16 15 34 34 H 1.07998 * 120.01311 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.3339 -1.1915 -1.8992 6 6 3.3835 -0.7464 -1.5023 7 7 3.8237 -1.3839 -2.5652 8 14 4.5890 0.1103 -0.3612 9 1 4.9396 -0.7975 0.7604 10 1 5.8187 0.4635 -1.1151 11 1 3.9671 1.3462 0.1782 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5570 3.6006 16 6 1.7061 -1.4299 4.4437 17 6 2.3666 -1.9815 5.5251 18 6 3.6878 -1.6518 5.7717 19 17 4.5145 -2.3403 7.1341 20 6 4.3496 -0.7742 4.9324 21 6 3.6896 -0.2260 3.8458 22 9 4.3349 0.6319 3.0255 23 1 -0.3634 0.4284 0.9342 24 1 -0.3633 0.5948 -0.8381 25 1 -0.3633 -1.0231 -0.0960 26 1 4.7742 -1.4088 -2.7567 27 1 0.4419 -2.0730 1.3348 28 1 1.8167 -2.5950 0.3320 29 1 1.9616 -2.5867 2.1060 30 1 1.9297 1.0871 2.3124 31 1 0.5721 -0.0344 2.5726 32 1 0.6736 -1.6841 4.2548 33 1 1.8499 -2.6666 6.1808 34 1 5.3808 -0.5170 5.1244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169177981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:39 Heat of formation + Delta-G solvation = -20.217178 kcal Electronic energy + Delta-G solvation = -19092.749511 eV Core-core repulsion = 15966.128862 eV Total energy + Delta-G solvation = -3126.620649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.68120 -39.36314 -37.38429 -36.45494 -32.78002 -31.49652 -30.68759 -29.17215 -26.67852 -25.52798 -23.65774 -22.94653 -21.22260 -19.14755 -17.67339 -16.81473 -16.59385 -15.89174 -15.63475 -14.86949 -14.67829 -14.21438 -13.84913 -13.61786 -13.36192 -13.23803 -12.94843 -12.77033 -12.27861 -11.81461 -11.58376 -11.31466 -11.18438 -11.12152 -11.02638 -10.90486 -10.60334 -10.32281 -9.95015 -9.60139 -9.15615 -8.97403 -8.57390 -8.47479 -7.30409 -6.01853 -4.09219 0.96755 1.09107 1.91622 3.39817 3.56968 3.61655 3.74745 4.35744 4.60824 4.63728 4.76424 4.84725 5.00433 5.18901 5.45975 5.48728 5.65086 5.89885 5.94680 5.96805 6.07064 6.12440 6.21881 6.24741 6.30430 6.35904 6.49069 6.73804 6.78553 6.97119 7.19591 7.63754 7.98188 8.17237 8.56958 8.97697 9.62798 11.07295 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.006215 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.590204 B = 4504.221802 C = 5033.815330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.512 4.512 5 H 0.072 0.928 6 C 0.083 3.917 7 N -0.899 5.899 8 Si 0.917 3.083 9 H -0.271 1.271 10 H -0.314 1.314 11 H -0.272 1.272 12 N -0.530 5.530 13 C 0.037 3.963 14 C 0.081 3.919 15 C -0.093 4.093 16 C -0.076 4.076 17 C -0.124 4.124 18 C -0.015 4.015 19 Cl -0.069 7.069 20 C -0.152 4.152 21 C 0.134 3.866 22 F -0.122 7.122 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.014 0.986 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 0.187 17.954 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.063 0.937 4 C -0.550 4.550 5 H 0.090 0.910 6 C -0.121 4.121 7 N -0.536 5.536 8 Si 0.748 3.252 9 H -0.196 1.196 10 H -0.242 1.242 11 H -0.198 1.198 12 N -0.255 5.255 13 C -0.111 4.111 14 C -0.047 4.047 15 C -0.095 4.095 16 C -0.094 4.094 17 C -0.143 4.143 18 C -0.042 4.042 19 Cl -0.040 7.040 20 C -0.172 4.172 21 C 0.114 3.886 22 F -0.100 7.100 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.054 0.104 17.890 18.007 hybrid contribution 0.144 0.410 0.562 0.711 sum -1.909 0.514 18.452 18.558 Atomic orbital electron populations 1.22288 0.99873 1.00895 0.99207 1.19907 0.89848 0.95466 0.88255 0.93710 1.20841 0.93060 1.36117 1.04994 0.91035 1.25032 0.98716 0.93938 0.94401 1.69961 1.14814 1.42024 1.26784 0.86207 0.78377 0.80701 0.79926 1.19601 1.24237 1.19769 1.62793 1.59569 1.02486 1.00639 1.22162 0.95989 0.90656 1.02329 1.21068 0.96317 0.98413 0.88868 1.20245 0.93052 0.98436 0.97756 1.20907 1.00301 0.95137 0.93097 1.21006 0.92718 1.01531 0.99004 1.20496 0.93352 0.98739 0.91594 1.98365 1.78795 1.83672 1.43167 1.20935 1.01458 0.99615 0.95174 1.17309 0.90468 0.91713 0.89155 1.91553 1.81055 1.66869 1.70544 0.95219 0.93032 0.93183 0.92742 0.96754 0.89676 0.93941 0.90361 0.93720 0.84325 0.84565 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.39 37.16 0.31 -2.84 16 2 C 0.17 3.87 1.70 -68.86 -0.12 3.75 16 3 H 0.05 1.07 6.76 -51.93 -0.35 0.72 16 4 C -0.51 -14.02 7.75 -34.44 -0.27 -14.28 16 5 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 6 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.92 23.95 25.57 -169.99 -4.35 19.60 16 9 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.31 -8.30 7.11 56.52 0.40 -7.89 16 11 H -0.27 -6.92 6.51 56.52 0.37 -6.56 16 12 N -0.53 -11.07 2.84 -237.73 -0.67 -11.75 16 13 C 0.04 0.71 8.53 60.06 0.51 1.22 16 14 C 0.08 1.39 4.27 -4.97 -0.02 1.37 16 15 C -0.09 -1.45 4.57 -104.55 -0.48 -1.93 16 16 C -0.08 -0.94 8.75 -39.60 -0.35 -1.29 16 17 C -0.12 -1.42 9.83 -39.54 -0.39 -1.81 16 18 C -0.01 -0.19 6.32 -39.51 -0.25 -0.44 16 19 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.26 16 20 C -0.15 -2.13 9.81 -39.48 -0.39 -2.52 16 21 C 0.13 2.21 7.25 -39.42 -0.29 1.93 16 22 F -0.12 -2.34 15.93 2.25 0.04 -2.30 16 23 H 0.03 0.49 6.50 -51.92 -0.34 0.15 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.96 6.78 -51.93 -0.35 0.61 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.01 0.25 6.63 -51.93 -0.34 -0.10 16 28 H 0.08 1.91 6.99 -51.93 -0.36 1.55 16 29 H 0.04 0.75 6.66 -51.93 -0.35 0.41 16 30 H 0.08 1.38 7.80 -51.93 -0.41 0.98 16 31 H 0.04 0.68 6.67 -51.93 -0.35 0.33 16 32 H 0.14 1.44 8.03 -52.49 -0.42 1.01 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -30.10 294.00 -7.22 -37.32 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.12 Total: -3.78 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.81 Total: -14.52 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.10 Total: -38.50 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.35 Total: 19.60 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.10 -7.22 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169177981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.108 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds