Wall clock time and date at job start Mon Mar 30 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47282 * 2 1 4 4 C 1.50697 * 109.47206 * 239.99652 * 2 1 3 5 5 H 1.08001 * 120.00169 * 354.96328 * 4 2 1 6 6 C 1.37876 * 119.99861 * 174.96034 * 4 2 1 7 7 N 1.31521 * 119.99694 * 178.96014 * 6 4 2 8 8 Si 1.86795 * 120.00381 * 358.96191 * 6 4 2 9 9 H 1.48497 * 109.47237 * 85.19393 * 8 6 4 10 10 H 1.48497 * 109.47103 * 205.19861 * 8 6 4 11 11 H 1.48500 * 109.46838 * 325.19602 * 8 6 4 12 12 N 1.46905 * 109.46919 * 119.99633 * 2 1 3 13 13 C 1.46894 * 110.99749 * 58.95651 * 12 2 1 14 14 C 1.46900 * 110.99972 * 294.99876 * 12 2 1 15 15 C 1.50704 * 109.46900 * 190.00098 * 14 12 2 16 16 C 1.38226 * 119.99774 * 259.72928 * 15 14 12 17 17 C 1.38204 * 120.03440 * 179.72792 * 16 15 14 18 18 C 1.38389 * 120.03912 * 0.54567 * 17 16 15 19 19 Cl 1.73600 * 119.99988 * 179.74944 * 18 17 16 20 20 C 1.38292 * 119.99569 * 359.72536 * 18 17 16 21 21 C 1.38447 * 119.99880 * 80.00250 * 15 14 12 22 22 F 1.35097 * 120.01920 * 0.02562 * 21 15 14 23 23 H 1.09008 * 109.47370 * 294.63682 * 1 2 3 24 24 H 1.09004 * 109.47017 * 54.63299 * 1 2 3 25 25 H 1.08996 * 109.47026 * 174.63737 * 1 2 3 26 26 H 0.97000 * 119.99648 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47150 * 296.04430 * 13 12 2 28 28 H 1.08994 * 109.47413 * 56.04751 * 13 12 2 29 29 H 1.09000 * 109.46998 * 176.04690 * 13 12 2 30 30 H 1.09001 * 109.47201 * 310.00107 * 14 12 2 31 31 H 1.09003 * 109.46966 * 70.00360 * 14 12 2 32 32 H 1.08001 * 119.98000 * 359.97438 * 16 15 14 33 33 H 1.07996 * 119.97771 * 180.25317 * 17 16 15 34 34 H 1.07998 * 120.01311 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.3339 -1.1915 -1.8992 6 6 3.3835 -0.7464 -1.5023 7 7 3.8237 -1.3839 -2.5652 8 14 4.5890 0.1103 -0.3612 9 1 4.9396 -0.7975 0.7604 10 1 5.8187 0.4635 -1.1151 11 1 3.9671 1.3462 0.1782 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5570 3.6006 16 6 1.7061 -1.4299 4.4437 17 6 2.3666 -1.9815 5.5251 18 6 3.6878 -1.6518 5.7717 19 17 4.5145 -2.3403 7.1341 20 6 4.3496 -0.7742 4.9324 21 6 3.6896 -0.2260 3.8458 22 9 4.3349 0.6319 3.0255 23 1 -0.3634 0.4284 0.9342 24 1 -0.3633 0.5948 -0.8381 25 1 -0.3633 -1.0231 -0.0960 26 1 4.7742 -1.4088 -2.7567 27 1 0.4419 -2.0730 1.3348 28 1 1.8167 -2.5950 0.3320 29 1 1.9616 -2.5867 2.1060 30 1 1.9297 1.0871 2.3124 31 1 0.5721 -0.0344 2.5726 32 1 0.6736 -1.6841 4.2548 33 1 1.8499 -2.6666 6.1808 34 1 5.3808 -0.5170 5.1244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169177981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:39 Heat of formation + Delta-G solvation = -37.833852 kcal Electronic energy + Delta-G solvation = -19093.513427 eV Core-core repulsion = 15966.128862 eV Total energy + Delta-G solvation = -3127.384565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.96569 -40.47685 -38.84245 -37.46272 -34.67378 -33.04228 -31.72257 -30.71036 -28.08407 -27.40246 -25.16446 -23.98459 -22.50111 -20.87917 -18.90760 -18.74713 -17.74362 -17.16640 -16.88553 -16.34172 -16.30033 -15.72453 -15.33543 -14.91150 -14.74705 -14.56796 -14.35083 -14.16904 -13.90281 -13.19274 -13.00380 -12.83777 -12.67313 -12.49340 -12.31330 -12.13558 -12.06279 -11.99789 -11.81734 -11.63033 -11.08942 -10.74810 -10.01828 -9.63542 -8.86636 -8.25740 -6.33554 -0.07866 0.06801 0.97084 1.43287 1.50690 1.62400 2.35885 2.46568 3.03285 3.27653 3.55828 3.63968 3.74164 3.95694 4.15333 4.40985 4.46048 4.49332 4.56455 4.69274 4.73930 4.78126 4.87534 4.95371 4.96645 5.09060 5.16533 5.28485 5.38348 5.48262 5.66197 5.68625 6.10829 6.45454 6.62439 6.82483 7.41083 8.86865 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.006215 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.590204 B = 4504.221802 C = 5033.815330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.172 3.828 3 H 0.034 0.966 4 C -0.502 4.502 5 H 0.038 0.962 6 C 0.036 3.964 7 N -0.946 5.946 8 Si 0.972 3.028 9 H -0.275 1.275 10 H -0.321 1.321 11 H -0.264 1.264 12 N -0.552 5.552 13 C 0.046 3.954 14 C 0.085 3.915 15 C -0.110 4.110 16 C -0.066 4.066 17 C -0.111 4.111 18 C -0.016 4.016 19 Cl -0.054 7.054 20 C -0.157 4.157 21 C 0.100 3.900 22 F -0.147 7.147 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.262 0.738 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -0.127 21.130 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.052 0.948 4 C -0.541 4.541 5 H 0.056 0.944 6 C -0.164 4.164 7 N -0.586 5.586 8 Si 0.802 3.198 9 H -0.201 1.201 10 H -0.251 1.251 11 H -0.189 1.189 12 N -0.278 5.278 13 C -0.102 4.102 14 C -0.042 4.042 15 C -0.111 4.111 16 C -0.084 4.084 17 C -0.129 4.129 18 C -0.043 4.043 19 Cl -0.025 7.025 20 C -0.176 4.176 21 C 0.080 3.920 22 F -0.126 7.126 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.543 -0.204 21.093 21.389 hybrid contribution 0.537 0.446 -0.296 0.758 sum -3.006 0.243 20.797 21.014 Atomic orbital electron populations 1.22153 0.96991 1.01182 1.01008 1.19694 0.92193 0.94080 0.87402 0.94849 1.21122 0.92140 1.34547 1.06248 0.94366 1.25656 1.00410 0.94873 0.95414 1.70071 1.14967 1.44694 1.28899 0.85336 0.76437 0.80044 0.77959 1.20061 1.25103 1.18864 1.62364 1.60613 1.03275 1.01500 1.22048 0.97561 0.89553 1.01034 1.21036 0.98140 0.97416 0.87585 1.20220 0.92837 0.99926 0.98160 1.21209 1.01408 0.93528 0.92281 1.21394 0.92102 1.00798 0.98613 1.20669 0.93953 0.98068 0.91608 1.98377 1.78662 1.83260 1.42171 1.21042 1.01932 0.99810 0.94863 1.17703 0.91368 0.92808 0.90149 1.91477 1.81646 1.67924 1.71512 0.91816 0.93218 0.93252 0.92922 0.94275 0.93703 0.92091 0.91434 0.90852 0.81418 0.81285 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 8.39 71.98 0.60 -4.99 16 2 C 0.17 7.70 1.70 44.17 0.08 7.77 16 3 H 0.03 1.58 6.76 -2.39 -0.02 1.56 16 4 C -0.50 -28.04 7.75 25.60 0.20 -27.84 16 5 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 6 C 0.04 2.10 5.47 84.65 0.46 2.57 16 7 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 8 Si 0.97 50.81 25.57 68.60 1.75 52.57 16 9 H -0.27 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.32 -17.01 7.11 99.48 0.71 -16.30 16 11 H -0.26 -13.23 6.51 99.48 0.65 -12.58 16 12 N -0.55 -22.20 2.84 -906.06 -2.57 -24.77 16 13 C 0.05 1.69 8.53 127.69 1.09 2.78 16 14 C 0.09 2.69 4.27 85.56 0.36 3.06 16 15 C -0.11 -3.12 4.57 -19.82 -0.09 -3.21 16 16 C -0.07 -1.35 8.75 22.26 0.19 -1.15 16 17 C -0.11 -2.03 9.83 22.30 0.22 -1.81 16 18 C -0.02 -0.35 6.32 22.32 0.14 -0.21 16 19 Cl -0.05 -1.02 28.96 -2.72 -0.08 -1.10 16 20 C -0.16 -4.12 9.81 22.33 0.22 -3.90 16 21 C 0.10 3.16 7.25 22.37 0.16 3.32 16 22 F -0.15 -5.60 15.93 44.97 0.72 -4.89 16 23 H 0.06 1.87 6.50 -2.38 -0.02 1.85 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.78 6.78 -2.39 -0.02 1.76 16 26 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 27 H 0.04 1.23 6.63 -2.39 -0.02 1.21 16 28 H 0.04 2.00 6.99 -2.39 -0.02 1.99 16 29 H 0.06 1.99 6.66 -2.39 -0.02 1.98 16 30 H 0.07 2.27 7.80 -2.39 -0.02 2.25 16 31 H 0.07 1.88 6.67 -2.39 -0.02 1.86 16 32 H 0.17 2.46 8.03 -2.91 -0.02 2.43 16 33 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -67.30 294.00 4.81 -62.49 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: 1.05 Total: -1.01 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.64 Total: -23.60 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.27 Total: -84.47 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.72 Total: -4.89 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.75 Total: 52.57 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -67.30 4.81 -62.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169177981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.658 kcal (2) G-P(sol) polarization free energy of solvation -67.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds