Wall clock time and date at job start Mon Mar 30 2020 01:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 C 1.38263 * 119.96952 * 260.00049 * 4 2 1 6 6 C 1.38196 * 120.04672 * 180.02562 * 5 4 2 7 7 C 1.38443 * 119.98904 * 359.97438 * 6 5 4 8 8 F 1.35103 * 120.03089 * 180.02562 * 7 6 5 9 9 C 1.38549 * 119.93952 * 0.02562 * 7 6 5 10 10 Cl 1.73600 * 120.02530 * 179.97438 * 9 7 6 11 11 C 1.38216 * 119.96747 * 79.72595 * 4 2 1 12 12 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 13 13 C 1.46909 * 111.00020 * 183.95360 * 12 2 1 14 14 C 1.46899 * 111.00239 * 60.00318 * 12 2 1 15 15 C 1.50694 * 109.47339 * 189.99735 * 14 12 2 16 16 H 1.08005 * 120.00327 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00217 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00336 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47219 * 120.00175 * 19 17 15 22 22 H 1.48498 * 109.47208 * 240.00026 * 19 17 15 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.97761 * 359.97438 * 5 4 2 27 27 H 1.08000 * 120.00757 * 179.97438 * 6 5 4 28 28 H 1.08003 * 119.99521 * 0.02562 * 11 4 2 29 29 H 1.08992 * 109.46818 * 59.99948 * 13 12 2 30 30 H 1.08995 * 109.47231 * 179.97438 * 13 12 2 31 31 H 1.09001 * 109.46905 * 300.00154 * 13 12 2 32 32 H 1.09005 * 109.46652 * 309.99590 * 14 12 2 33 33 H 1.09001 * 109.47189 * 69.99202 * 14 12 2 34 34 H 0.97005 * 119.99568 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4587 0.0202 2.3241 6 6 2.9201 -0.6296 3.4531 7 6 2.9552 -2.0131 3.4895 8 9 3.4057 -2.6492 4.5930 9 6 2.5279 -2.7447 2.3933 10 17 2.5715 -4.4796 2.4363 11 6 2.0611 -2.0918 1.2667 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8579 -0.8910 -3.6159 16 1 2.3550 -1.8404 -3.4813 17 6 1.5062 -0.4703 -4.8809 18 7 0.9013 0.6860 -5.0449 19 14 1.8889 -1.5424 -6.3619 20 1 2.5689 -2.7836 -5.9121 21 1 0.6253 -1.8942 -7.0582 22 1 2.7774 -0.8016 -7.2930 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.4318 1.0994 2.2958 27 1 3.2534 -0.0583 4.3069 28 1 1.7241 -2.6615 0.4133 29 1 3.8029 -1.3531 -0.3068 30 1 3.8208 -1.3117 -2.0859 31 1 3.9186 0.2051 -1.1592 32 1 0.4721 0.1324 -2.3563 33 1 2.0518 0.9346 -2.5280 34 1 0.6542 0.9821 -5.9350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177191891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:34 Heat of formation + Delta-G solvation = -39.816589 kcal Electronic energy + Delta-G solvation = -18443.587678 eV Core-core repulsion = 15316.117135 eV Total energy + Delta-G solvation = -3127.470543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98239 -40.76679 -38.35006 -37.43859 -34.85116 -32.85447 -31.96637 -30.33680 -29.05623 -26.17462 -25.00271 -24.19441 -22.97004 -20.93389 -18.84923 -18.52559 -17.78103 -17.01365 -16.80521 -16.60527 -16.13602 -15.55458 -15.48035 -14.76565 -14.63629 -14.47617 -14.24964 -13.89736 -13.82566 -13.25798 -13.01531 -12.93558 -12.65890 -12.55905 -12.49604 -12.21448 -12.19802 -12.08977 -11.96024 -11.47589 -11.23337 -10.56362 -9.94831 -9.58040 -9.00976 -8.17909 -6.25851 -0.07320 0.10740 0.98963 1.41421 1.43108 1.55481 2.39337 2.44348 3.06512 3.15303 3.27363 3.59577 3.72126 4.14191 4.18031 4.33939 4.44204 4.50025 4.60196 4.72119 4.81598 4.90813 4.98188 5.00752 5.10118 5.12267 5.28496 5.30075 5.39279 5.48985 5.68031 5.72092 6.10588 6.34947 6.66162 6.90333 7.43210 8.93053 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026698 B = 0.004642 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.502830 B = 6030.848940 C = 6659.600038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.116 3.884 3 H 0.047 0.953 4 C -0.070 4.070 5 C -0.076 4.076 6 C -0.130 4.130 7 C 0.090 3.910 8 F -0.135 7.135 9 C -0.084 4.084 10 Cl -0.060 7.060 11 C -0.063 4.063 12 N -0.539 5.539 13 C 0.041 3.959 14 C 0.204 3.796 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.163 0.837 27 H 0.174 0.826 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.012 0.988 32 H 0.023 0.977 33 H -0.038 1.038 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -2.385 17.542 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.008 3.992 3 H 0.065 0.935 4 C -0.070 4.070 5 C -0.095 4.095 6 C -0.148 4.148 7 C 0.070 3.930 8 F -0.114 7.114 9 C -0.112 4.112 10 Cl -0.031 7.031 11 C -0.082 4.082 12 N -0.263 5.263 13 C -0.107 4.107 14 C 0.078 3.922 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.193 4.193 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.206 1.206 23 H 0.101 0.899 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.181 0.819 27 H 0.192 0.808 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.041 0.959 33 H -0.021 1.021 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.920 -2.941 17.460 17.945 hybrid contribution 0.446 0.094 -1.044 1.139 sum 3.366 -2.846 16.416 16.997 Atomic orbital electron populations 1.21831 0.93034 1.02447 1.01997 1.20578 0.96295 0.94680 0.87655 0.93498 1.19864 0.98705 0.92832 0.95644 1.21278 0.95523 1.01828 0.90844 1.21334 1.01768 0.90678 1.01030 1.17607 1.01296 0.91245 0.82867 1.91508 1.86760 1.82406 1.50715 1.21074 1.08025 0.85548 0.96519 1.98371 1.97246 1.08924 1.98587 1.20846 0.96873 0.94591 0.95848 1.62110 1.10208 1.52132 1.01882 1.22190 0.87796 0.99041 1.01690 1.19477 0.94972 0.91121 0.86583 1.21504 1.37738 1.04926 0.91615 0.92161 1.25801 0.95156 0.96421 1.01970 1.70076 1.42215 1.21668 1.23401 0.85434 0.77916 0.78934 0.78939 1.18996 1.20536 1.20621 0.89933 0.93446 0.92459 0.81918 0.80823 0.84513 0.91190 0.92568 0.96964 0.95880 1.02074 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.96 71.98 0.65 -3.51 16 2 C 0.12 3.71 2.27 44.17 0.10 3.81 16 3 H 0.05 1.48 8.00 -2.39 -0.02 1.46 16 4 C -0.07 -1.82 3.77 -19.86 -0.07 -1.89 16 5 C -0.08 -1.50 9.67 22.27 0.22 -1.29 16 6 C -0.13 -2.36 10.03 22.31 0.22 -2.13 16 7 C 0.09 2.08 7.28 22.39 0.16 2.25 16 8 F -0.14 -3.23 16.84 44.97 0.76 -2.48 16 9 C -0.08 -2.19 6.33 22.36 0.14 -2.05 16 10 Cl -0.06 -1.56 28.62 -2.72 -0.08 -1.63 16 11 C -0.06 -1.74 7.86 22.28 0.18 -1.57 16 12 N -0.54 -21.71 3.97 -906.05 -3.59 -25.30 16 13 C 0.04 1.54 8.95 127.69 1.14 2.68 16 14 C 0.20 10.34 4.54 85.56 0.39 10.72 16 15 C -0.52 -28.65 8.46 25.60 0.22 -28.43 16 16 H 0.06 3.30 7.12 -2.91 -0.02 3.28 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 19 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 1.68 6.20 -2.39 -0.01 1.67 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.16 2.35 8.03 -2.91 -0.02 2.33 16 27 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.14 4.31 7.72 -2.91 -0.02 4.29 16 29 H 0.07 2.26 6.12 -2.39 -0.01 2.25 16 30 H 0.06 2.30 6.76 -2.39 -0.02 2.29 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.02 1.24 5.83 -2.38 -0.01 1.23 16 33 H -0.04 -2.13 8.12 -2.39 -0.02 -2.15 16 34 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -61.09 301.84 4.30 -56.79 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.10 Total: 2.05 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 3.80 Total: -20.70 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -3.31 Total: -79.90 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.76 Total: -2.48 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.63 kcal Total: -61.09 4.30 -56.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.977 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds