Wall clock time and date at job start Mon Mar 30 2020 01:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 C 1.38259 * 119.96833 * 279.73003 * 4 2 1 6 6 C 1.38196 * 120.04694 * 179.72737 * 5 4 2 7 7 C 1.38449 * 119.98793 * 0.56286 * 6 5 4 8 8 F 1.35092 * 120.03573 * 179.72817 * 7 6 5 9 9 C 1.38554 * 119.93612 * 359.70988 * 7 6 5 10 10 Cl 1.73594 * 120.02368 * 180.02562 * 9 7 6 11 11 C 1.38215 * 119.96466 * 100.00302 * 4 2 1 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46898 * 111.00052 * 176.04736 * 12 2 1 14 14 C 1.46898 * 110.99498 * 299.99832 * 12 2 1 15 15 C 1.50706 * 109.47237 * 170.00051 * 14 12 2 16 16 H 1.08000 * 119.99318 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00342 * 180.02562 * 15 14 12 18 18 N 1.31511 * 119.99771 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99863 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46978 * 89.99795 * 19 17 15 21 21 H 1.48500 * 109.47248 * 209.99639 * 19 17 15 22 22 H 1.48496 * 109.47317 * 330.00012 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.97897 * 359.97438 * 5 4 2 27 27 H 1.08001 * 120.00979 * 180.27273 * 6 5 4 28 28 H 1.08003 * 119.99739 * 359.97438 * 11 4 2 29 29 H 1.08994 * 109.47157 * 59.99647 * 13 12 2 30 30 H 1.09005 * 109.46959 * 179.97438 * 13 12 2 31 31 H 1.09004 * 109.46870 * 299.99082 * 13 12 2 32 32 H 1.08996 * 109.47382 * 289.99610 * 14 12 2 33 33 H 1.08999 * 109.47770 * 50.00048 * 14 12 2 34 34 H 0.96998 * 119.99810 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.0717 -2.0922 -1.2625 6 6 2.5268 -2.7455 -2.3921 7 6 2.9545 -2.0159 -3.4883 8 9 3.4047 -2.6535 -4.5909 9 6 2.9202 -0.6313 -3.4535 10 17 3.4554 0.2857 -4.8269 11 6 2.4585 0.0199 -2.3237 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 1.8580 -0.8911 3.6160 16 1 2.3544 -1.8407 3.4812 17 6 1.5063 -0.4704 4.8810 18 7 0.9013 0.6858 5.0449 19 14 1.8891 -1.5426 6.3619 20 1 3.2331 -1.1958 6.8899 21 1 0.8687 -1.3131 7.4162 22 1 1.8698 -2.9711 5.9570 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.7429 -2.6614 -0.4057 27 1 2.5531 -3.8248 -2.4180 28 1 2.4311 1.0992 -2.2960 29 1 3.9186 0.2051 1.1591 30 1 3.8210 -1.3109 2.0863 31 1 3.8029 -1.3533 0.3067 32 1 2.0519 0.9345 2.5280 33 1 0.4723 0.1324 2.3564 34 1 0.6543 0.9820 5.9349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177191902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:37 Heat of formation + Delta-G solvation = -25.006409 kcal Electronic energy + Delta-G solvation = -18371.254095 eV Core-core repulsion = 15244.425770 eV Total energy + Delta-G solvation = -3126.828325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.98163 -39.64263 -37.09164 -36.30544 -32.92640 -31.49772 -30.85617 -29.12880 -27.19637 -24.50828 -23.60664 -23.18332 -21.54006 -19.51736 -17.80352 -16.69960 -16.61774 -15.79653 -15.69566 -14.94065 -14.52016 -14.41009 -13.97121 -13.84866 -13.44610 -13.05118 -12.91541 -12.71279 -12.02340 -11.76736 -11.71851 -11.50902 -11.33084 -11.11539 -10.93917 -10.88136 -10.84516 -10.64311 -10.30165 -9.80968 -9.27014 -9.01294 -8.51726 -8.44959 -7.37017 -6.07366 -4.08436 0.97464 1.06170 1.92280 3.28830 3.35577 3.39058 3.44269 4.04611 4.37278 4.57174 4.76109 4.85048 5.15529 5.23228 5.28751 5.49926 5.67409 5.71432 5.85305 5.87296 6.00046 6.14797 6.17900 6.25362 6.36564 6.54218 6.63751 6.71128 6.73245 7.23244 7.27680 7.73931 8.01439 8.11354 8.46824 8.98710 9.55781 11.03530 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.004044 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.144897 B = 6921.612255 C = 7235.897701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.116 3.884 3 H 0.042 0.958 4 C -0.060 4.060 5 C -0.056 4.056 6 C -0.147 4.147 7 C 0.096 3.904 8 F -0.134 7.134 9 C -0.075 4.075 10 Cl -0.061 7.061 11 C -0.085 4.085 12 N -0.532 5.532 13 C 0.033 3.967 14 C 0.189 3.811 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.047 0.953 32 H -0.009 1.009 33 H 0.039 0.961 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -2.660 -15.886 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.061 4.061 5 C -0.075 4.075 6 C -0.165 4.165 7 C 0.076 3.924 8 F -0.112 7.112 9 C -0.103 4.103 10 Cl -0.033 7.033 11 C -0.104 4.104 12 N -0.257 5.257 13 C -0.115 4.115 14 C 0.064 3.936 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.170 0.830 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.009 0.991 33 H 0.057 0.943 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.214 -2.955 -15.903 16.326 hybrid contribution 0.723 0.378 0.539 0.978 sum 2.936 -2.577 -15.364 15.853 Atomic orbital electron populations 1.21873 0.93327 1.02779 1.01764 1.20538 0.95923 0.94608 0.88237 0.93972 1.20076 0.97017 0.94012 0.94990 1.21207 0.95019 0.94165 0.97059 1.21197 1.02095 1.00918 0.92337 1.17417 1.01515 0.88551 0.84909 1.91505 1.86781 1.81804 1.51116 1.20871 1.07262 0.90284 0.91840 1.98367 1.88828 1.73624 1.42436 1.20872 0.97948 1.00761 0.90830 1.62241 1.09394 1.52038 1.02049 1.22278 0.88605 0.99050 1.01596 1.19839 0.96268 0.92589 0.84889 1.21140 1.38238 1.04840 0.90389 0.91854 1.24971 0.95300 0.95222 0.99048 1.69949 1.40995 1.20087 1.22756 0.86514 0.77928 0.80828 0.82245 1.20782 1.21269 1.19767 0.93134 0.90882 0.91789 0.82958 0.83996 0.84322 0.97040 0.90508 0.93470 0.99150 0.94261 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.97 37.16 0.33 -1.83 16 2 C 0.12 1.89 2.28 -68.86 -0.16 1.73 16 3 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 4 C -0.06 -0.84 3.79 -104.62 -0.40 -1.24 16 5 C -0.06 -0.74 8.04 -39.59 -0.32 -1.06 16 6 C -0.15 -1.75 10.03 -39.52 -0.40 -2.15 16 7 C 0.10 1.24 7.28 -39.39 -0.29 0.95 16 8 F -0.13 -1.76 16.84 2.25 0.04 -1.72 16 9 C -0.08 -0.97 6.33 -39.43 -0.25 -1.22 16 10 Cl -0.06 -0.74 28.62 -51.86 -1.48 -2.22 16 11 C -0.08 -1.09 9.45 -39.56 -0.37 -1.47 16 12 N -0.53 -10.45 3.95 -237.72 -0.94 -11.39 16 13 C 0.03 0.61 8.95 60.06 0.54 1.15 16 14 C 0.19 4.60 4.54 -4.97 -0.02 4.58 16 15 C -0.51 -13.58 8.46 -34.44 -0.29 -13.87 16 16 H 0.06 1.68 7.12 -52.49 -0.37 1.30 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 1.26 6.20 -51.93 -0.32 0.94 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.15 2.10 7.70 -52.49 -0.40 1.69 16 27 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.14 1.60 8.04 -52.48 -0.42 1.18 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 1.52 6.76 -51.93 -0.35 1.17 16 31 H 0.05 0.76 6.10 -51.93 -0.32 0.44 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 33 H 0.04 1.00 5.83 -51.93 -0.30 0.70 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -27.82 301.77 -8.00 -35.82 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -4.16 Total: -2.93 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -1.72 Total: -12.98 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.20 Total: -36.51 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.82 -8.00 -35.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds