Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 S 1.81406 * 109.46781 * 89.99907 * 5 4 3 7 7 C 1.81402 * 102.99834 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47037 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47016 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47064 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00580 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99878 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99784 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47317 * 90.00168 * 14 12 10 16 16 H 1.48497 * 109.47181 * 210.00263 * 14 12 10 17 17 H 1.48503 * 109.47355 * 330.00045 * 14 12 10 18 18 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 19 19 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 20 20 C 1.50700 * 126.03597 * 0.25055 * 19 2 1 21 21 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 22 22 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 23 23 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 24 24 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 25 25 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 26 26 H 1.09000 * 109.46963 * 300.00553 * 7 6 5 27 27 H 1.09004 * 109.46929 * 59.99837 * 7 6 5 28 28 H 1.09000 * 109.47481 * 299.99973 * 8 7 6 29 29 H 1.08999 * 109.47200 * 60.00197 * 8 7 6 30 30 H 1.09005 * 109.47284 * 299.99410 * 9 8 7 31 31 H 1.08992 * 109.47367 * 59.99685 * 9 8 7 32 32 H 0.97003 * 119.99674 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.47176 * 90.00027 * 20 19 2 34 34 H 1.09000 * 109.46916 * 209.99905 * 20 19 2 35 35 H 1.08999 * 109.47044 * 329.99869 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 16 4.8697 2.5918 1.7163 7 6 6.0426 3.9605 1.5124 8 6 6.4727 4.4727 2.8884 9 6 7.4615 5.6276 2.7164 10 6 7.8847 6.1326 4.0717 11 1 7.4884 5.6754 4.9664 12 6 8.7787 7.1778 4.1697 13 7 9.2617 7.7343 3.0804 14 14 9.3027 7.8042 5.8497 15 1 10.5052 7.0598 6.3027 16 1 9.6211 9.2519 5.7610 17 1 8.1984 7.5989 6.8212 18 16 3.9332 -0.6730 0.0121 19 6 2.2300 -1.1239 0.0058 20 6 1.6847 -2.5288 0.0078 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 5.3979 1.8233 -0.5034 25 1 4.0453 2.9803 -0.5122 26 1 6.9180 3.6103 0.9655 27 1 5.5658 4.7678 0.9564 28 1 5.5975 4.8228 3.4357 29 1 6.9496 3.6653 3.4439 30 1 8.3369 5.2779 2.1690 31 1 6.9843 6.4349 2.1610 32 1 9.8903 8.4698 3.1494 33 1 1.5570 -2.8705 -1.0194 34 1 2.3811 -3.1881 0.5260 35 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178399008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = 12.222916 kcal Electronic energy + Delta-G solvation = -15139.227348 eV Core-core repulsion = 12582.270290 eV Total energy + Delta-G solvation = -2556.957058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12460 -34.47177 -34.15356 -32.03249 -30.72342 -29.41773 -27.48539 -25.27064 -23.63140 -22.79497 -20.27603 -19.08076 -18.14895 -16.53419 -16.03171 -15.47162 -15.04689 -14.74173 -14.53648 -13.97256 -13.92712 -13.56369 -13.24853 -13.18573 -12.82924 -12.52511 -12.47256 -12.24674 -11.72147 -11.67952 -11.29567 -10.92726 -10.87806 -10.54491 -9.93004 -9.81101 -9.79445 -9.37562 -9.32740 -9.12601 -8.70930 -8.37080 -7.49526 -6.02154 -4.04561 0.34790 1.10464 1.53158 1.77869 2.68688 2.81106 3.32165 3.38269 3.42375 3.78075 4.45360 4.59266 4.67062 4.76539 4.93200 5.07352 5.16034 5.31268 5.33905 5.34703 5.48303 5.50490 5.54810 5.60653 5.69359 6.06778 6.10157 6.53901 6.70104 7.00549 7.57533 7.62763 7.74734 7.96783 8.38585 9.01830 9.59673 11.09212 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.050445 B = 0.002723 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.926487 B =10279.554418 C =10335.116267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.457 5.457 4 C 0.067 3.933 5 C -0.020 4.020 6 S -0.249 6.249 7 C -0.075 4.075 8 C -0.095 4.095 9 C 0.028 3.972 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 S 0.139 5.861 19 C -0.232 4.232 20 C -0.073 4.073 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 -19.727 -9.661 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 N -0.172 5.172 4 C -0.211 4.211 5 C -0.171 4.171 6 S -0.022 6.022 7 C -0.223 4.223 8 C -0.134 4.134 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 S 0.395 5.605 19 C -0.354 4.354 20 C -0.132 4.132 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.175 -20.035 -8.810 26.076 hybrid contribution 0.026 1.082 -0.286 1.119 sum -14.148 -18.953 -9.096 25.341 Atomic orbital electron populations 1.20360 0.87111 1.03394 1.02793 1.20165 0.98183 0.86104 1.02575 1.66080 1.04253 1.31636 1.15269 1.25919 0.93603 0.97306 1.04272 1.21784 0.98465 0.97240 0.99613 1.87174 1.60298 1.46842 1.07918 1.23707 0.98141 0.96021 1.04410 1.21474 1.00459 0.99906 0.91555 1.19104 0.93065 0.91497 0.97434 1.21222 1.25622 1.16468 0.92588 0.92529 1.25023 0.96208 0.96559 0.96654 1.69960 1.31453 1.24614 1.27502 0.86568 0.78977 0.77974 0.84355 1.20621 1.21201 1.19810 1.83964 1.06367 1.02174 1.67996 1.25755 0.95345 1.01039 1.13291 1.20234 1.01186 0.88978 1.02791 0.90723 0.90717 0.90481 0.88083 0.87215 0.90277 0.90197 0.92278 0.92317 0.96385 0.96357 0.92955 0.90602 0.91092 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.06 36.01 0.36 -0.27 16 2 C 0.06 0.72 6.74 -84.22 -0.57 0.15 16 3 N -0.46 -6.41 10.53 -8.06 -0.08 -6.50 16 4 C 0.07 0.88 6.65 -13.45 -0.09 0.79 16 5 C -0.02 -0.26 6.52 36.01 0.23 -0.02 16 6 S -0.25 -3.98 21.72 -107.50 -2.33 -6.32 16 7 C -0.07 -1.28 5.94 37.15 0.22 -1.06 16 8 C -0.09 -1.97 5.16 -26.73 -0.14 -2.11 16 9 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 10 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 14 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 S 0.14 1.51 23.18 -107.50 -2.49 -0.98 16 19 C -0.23 -2.34 6.59 -35.92 -0.24 -2.58 16 20 C -0.07 -0.46 10.10 36.01 0.36 -0.10 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.45 6.71 -51.92 -0.35 0.10 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.11 1.35 8.14 -51.92 -0.42 0.93 16 26 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.41 6.75 -51.93 -0.35 0.06 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -31.66 324.10 -10.03 -41.69 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -5.31 Total: -5.17 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.40 Total: -18.19 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.65 Total: -32.64 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -4.83 Total: -7.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.66 -10.03 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178399008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.909 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds