Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 S 1.81406 * 109.46781 * 89.99907 * 5 4 3 7 7 C 1.81402 * 102.99834 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47037 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47016 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47064 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00580 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99878 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99784 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47317 * 90.00168 * 14 12 10 16 16 H 1.48497 * 109.47181 * 210.00263 * 14 12 10 17 17 H 1.48503 * 109.47355 * 330.00045 * 14 12 10 18 18 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 19 19 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 20 20 C 1.50700 * 126.03597 * 0.25055 * 19 2 1 21 21 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 22 22 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 23 23 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 24 24 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 25 25 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 26 26 H 1.09000 * 109.46963 * 300.00553 * 7 6 5 27 27 H 1.09004 * 109.46929 * 59.99837 * 7 6 5 28 28 H 1.09000 * 109.47481 * 299.99973 * 8 7 6 29 29 H 1.08999 * 109.47200 * 60.00197 * 8 7 6 30 30 H 1.09005 * 109.47284 * 299.99410 * 9 8 7 31 31 H 1.08992 * 109.47367 * 59.99685 * 9 8 7 32 32 H 0.97003 * 119.99674 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.47176 * 90.00027 * 20 19 2 34 34 H 1.09000 * 109.46916 * 209.99905 * 20 19 2 35 35 H 1.08999 * 109.47044 * 329.99869 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 16 4.8697 2.5918 1.7163 7 6 6.0426 3.9605 1.5124 8 6 6.4727 4.4727 2.8884 9 6 7.4615 5.6276 2.7164 10 6 7.8847 6.1326 4.0717 11 1 7.4884 5.6754 4.9664 12 6 8.7787 7.1778 4.1697 13 7 9.2617 7.7343 3.0804 14 14 9.3027 7.8042 5.8497 15 1 10.5052 7.0598 6.3027 16 1 9.6211 9.2519 5.7610 17 1 8.1984 7.5989 6.8212 18 16 3.9332 -0.6730 0.0121 19 6 2.2300 -1.1239 0.0058 20 6 1.6847 -2.5288 0.0078 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 5.3979 1.8233 -0.5034 25 1 4.0453 2.9803 -0.5122 26 1 6.9180 3.6103 0.9655 27 1 5.5658 4.7678 0.9564 28 1 5.5975 4.8228 3.4357 29 1 6.9496 3.6653 3.4439 30 1 8.3369 5.2779 2.1690 31 1 6.9843 6.4349 2.1610 32 1 9.8903 8.4698 3.1494 33 1 1.5570 -2.8705 -1.0194 34 1 2.3811 -3.1881 0.5260 35 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178399008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -5.199464 kcal Electronic energy + Delta-G solvation = -15139.982840 eV Core-core repulsion = 12582.270290 eV Total energy + Delta-G solvation = -2557.712549 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97740 -36.37511 -34.94329 -34.05741 -31.50561 -30.16214 -29.39568 -25.99780 -25.42171 -23.87596 -22.06460 -19.92232 -19.00510 -18.54810 -17.31883 -16.61536 -16.36240 -16.26764 -15.89730 -15.00694 -14.90282 -14.53882 -14.43655 -13.89307 -13.82473 -13.80491 -13.62381 -13.38122 -13.15546 -12.82765 -12.76610 -12.73385 -12.37726 -12.02663 -11.66613 -11.48283 -11.23318 -11.00961 -10.68535 -10.56635 -10.22219 -9.55017 -8.75960 -8.21744 -6.32550 -0.56328 0.26895 0.63771 0.71696 1.40237 1.41344 1.48651 1.52852 1.86014 2.40745 2.91656 3.11761 3.74643 3.99205 4.02725 4.04078 4.07811 4.13148 4.36518 4.57597 4.58592 4.67623 4.78900 4.80752 4.89339 4.95618 5.00313 5.04747 5.12403 5.40200 5.48394 5.67795 5.81702 6.21912 6.71611 6.82971 7.36548 8.90002 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.050445 B = 0.002723 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.926487 B =10279.554418 C =10335.116267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.033 3.967 3 N -0.484 5.484 4 C 0.035 3.965 5 C -0.007 4.007 6 S -0.272 6.272 7 C -0.066 4.066 8 C -0.081 4.081 9 C 0.032 3.968 10 C -0.545 4.545 11 H 0.058 0.942 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.964 3.036 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.265 1.265 18 S 0.158 5.842 19 C -0.220 4.220 20 C -0.075 4.075 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.000 1.000 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 -21.552 -9.458 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.200 5.200 4 C -0.242 4.242 5 C -0.158 4.158 6 S -0.045 6.045 7 C -0.215 4.215 8 C -0.120 4.120 9 C -0.007 4.007 10 C -0.584 4.584 11 H 0.076 0.924 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.789 3.211 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.190 1.190 18 S 0.413 5.587 19 C -0.342 4.342 20 C -0.134 4.134 21 H 0.104 0.896 22 H 0.117 0.883 23 H 0.084 0.916 24 H 0.140 0.860 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.014 -21.860 -8.603 27.880 hybrid contribution 0.209 1.523 -0.422 1.594 sum -14.805 -20.337 -9.026 26.725 Atomic orbital electron populations 1.20451 0.85163 1.04016 1.03746 1.20670 0.99617 0.85972 1.03615 1.66083 1.04954 1.33453 1.15554 1.25900 0.93610 0.98406 1.06301 1.21791 0.99565 0.97643 0.96807 1.87160 1.59767 1.46010 1.11598 1.23422 0.99125 0.96892 1.02030 1.21169 0.98891 0.98114 0.93822 1.18975 0.93340 0.92526 0.95893 1.21665 1.25989 1.16965 0.93740 0.92387 1.25953 0.96156 0.96732 1.00824 1.70079 1.32053 1.25164 1.29862 0.85455 0.78838 0.77469 0.79352 1.19631 1.20583 1.18970 1.83830 1.07145 1.00452 1.67232 1.26297 0.94672 1.02475 1.10767 1.20442 1.02045 0.86651 1.04281 0.89572 0.88305 0.91634 0.85996 0.87078 0.89270 0.89867 0.92874 0.92454 0.98194 0.98450 0.92664 0.88842 0.90187 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.06 71.24 0.72 -0.38 16 2 C 0.03 0.71 6.74 41.52 0.28 0.99 16 3 N -0.48 -13.31 10.53 -179.40 -1.89 -15.20 16 4 C 0.03 0.89 6.65 88.52 0.59 1.48 16 5 C -0.01 -0.18 6.52 71.24 0.46 0.28 16 6 S -0.27 -8.60 21.72 -56.49 -1.23 -9.83 16 7 C -0.07 -2.27 5.94 71.98 0.43 -1.85 16 8 C -0.08 -3.43 5.16 30.59 0.16 -3.27 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 14 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 S 0.16 3.19 23.18 -56.49 -1.31 1.88 16 19 C -0.22 -3.95 6.59 24.64 0.16 -3.79 16 20 C -0.08 -0.71 10.10 71.24 0.72 0.01 16 21 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.10 0.92 6.71 -2.38 -0.02 0.90 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.62 6.75 -2.39 -0.02 0.60 16 Total: -1.00 -68.50 324.10 3.31 -65.19 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.06 Total: 3.06 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.36 Total: -35.39 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.60 Total: -71.58 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -2.54 Total: -7.95 kcal Total: -68.50 3.31 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178399008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.993 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds