Wall clock time and date at job start Mon Mar 30 2020 01:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47312 * 2 1 4 4 C 1.52997 * 109.47392 * 120.00412 * 2 1 3 5 5 H 1.08996 * 109.47004 * 184.99832 * 4 2 1 6 6 N 1.46499 * 109.46921 * 64.99764 * 4 2 1 7 7 C 1.36934 * 120.00045 * 86.95223 * 6 4 2 8 8 H 1.08002 * 120.00343 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00229 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99894 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00558 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47278 * 89.99724 * 11 9 7 13 13 H 1.48499 * 109.47417 * 210.00095 * 11 9 7 14 14 H 1.48504 * 109.46925 * 330.00419 * 11 9 7 15 15 C 1.50692 * 109.47065 * 304.99690 * 4 2 1 16 16 C 1.38233 * 120.00170 * 91.77848 * 15 4 2 17 17 C 1.38196 * 120.04010 * 180.02562 * 16 15 4 18 18 C 1.38382 * 120.04055 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 120.00351 * 179.97438 * 18 17 16 20 20 C 1.38300 * 119.99918 * 359.97438 * 18 17 16 21 21 C 1.38451 * 120.00382 * 271.79970 * 15 4 2 22 22 F 1.35105 * 120.01357 * 359.96236 * 21 15 4 23 23 H 1.09006 * 109.46431 * 299.99851 * 1 2 3 24 24 H 1.09001 * 109.47284 * 59.99278 * 1 2 3 25 25 H 1.08996 * 109.47479 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46779 * 240.00425 * 2 1 3 27 27 H 1.09000 * 109.46852 * 60.00470 * 3 2 1 28 28 H 1.09002 * 109.46685 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47014 * 300.00524 * 3 2 1 30 30 H 0.97001 * 120.00046 * 266.95173 * 6 4 2 31 31 H 0.96999 * 120.00447 * 180.02562 * 10 9 7 32 32 H 1.07998 * 119.97843 * 0.02562 * 16 15 4 33 33 H 1.08000 * 119.98236 * 180.28235 * 17 16 15 34 34 H 1.07996 * 120.01900 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1263 -0.6444 1.2950 6 7 1.6524 -2.1329 1.1904 7 6 2.4549 -3.0370 0.5473 8 1 3.3734 -2.7095 0.0830 9 6 2.0879 -4.3747 0.4920 10 7 0.9683 -4.7738 1.0573 11 14 3.1829 -5.6083 -0.3846 12 1 4.1618 -6.1735 0.5786 13 1 2.3483 -6.7028 -0.9418 14 1 3.9095 -4.9292 -1.4875 15 6 1.4392 -0.0861 2.4765 16 6 0.2579 -0.5765 3.0007 17 6 -0.2940 0.0058 4.1260 18 6 0.3349 1.0808 4.7289 19 17 -0.3596 1.8120 6.1420 20 6 1.5169 1.5728 4.2058 21 6 2.0701 0.9891 3.0789 22 9 3.2249 1.4685 2.5670 23 1 -0.3632 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 0.8273 -2.4270 1.6070 31 1 0.7120 -5.7085 1.0191 32 1 -0.2339 -1.4152 2.5307 33 1 -1.2146 -0.3811 4.5374 34 1 2.0078 2.4121 4.6759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180266713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:09 Heat of formation + Delta-G solvation = -25.363711 kcal Electronic energy + Delta-G solvation = -19020.054953 eV Core-core repulsion = 15893.211134 eV Total energy + Delta-G solvation = -3126.843819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.73622 -39.41969 -37.01365 -35.92510 -33.26964 -31.16101 -30.47525 -29.69371 -26.70550 -25.52157 -23.44675 -22.31327 -21.81783 -18.98220 -17.87172 -17.11726 -16.28562 -15.83586 -15.64780 -14.81313 -14.38131 -14.17244 -13.73414 -13.58954 -13.40530 -13.11164 -13.07017 -12.56707 -12.14808 -11.70909 -11.40026 -11.24572 -11.14054 -11.00844 -10.95359 -10.89966 -10.62442 -10.34959 -10.18915 -9.94255 -9.71184 -9.01846 -8.79174 -8.32660 -7.06593 -5.84880 -3.13794 1.16829 1.25691 2.06035 3.40324 3.46144 3.47147 3.62173 4.42352 4.52895 4.82213 5.00621 5.08472 5.34811 5.38611 5.53796 5.58826 5.66988 5.68919 5.94791 6.05976 6.06473 6.09921 6.22928 6.31400 6.36082 6.43901 6.48206 6.65911 6.72966 6.89052 6.95658 7.02948 7.64961 8.33119 9.45052 9.97297 10.32899 11.37726 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.005639 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.265736 B = 4964.197550 C = 5533.865848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.216 3.784 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.932 5.932 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.088 4.088 16 C -0.065 4.065 17 C -0.120 4.120 18 C -0.021 4.021 19 Cl -0.073 7.073 20 C -0.152 4.152 21 C 0.110 3.890 22 F -0.131 7.131 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 13.293 5.214 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.105 3.895 5 H 0.082 0.918 6 N -0.359 5.359 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.580 5.580 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.090 4.090 16 C -0.083 4.083 17 C -0.139 4.139 18 C -0.048 4.048 19 Cl -0.044 7.044 20 C -0.171 4.171 21 C 0.090 3.910 22 F -0.110 7.110 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.066 0.934 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.185 13.240 5.226 14.401 hybrid contribution 0.445 -0.666 -0.230 0.833 sum -1.740 12.574 4.996 13.642 Atomic orbital electron populations 1.21792 0.95775 1.02205 1.00017 1.21755 0.96125 0.94747 1.00438 1.21931 1.00812 0.96972 1.00683 1.19194 0.96947 0.85496 0.87820 0.91818 1.42495 1.26435 1.00715 1.66278 1.19232 1.02252 0.88406 1.27284 0.90977 1.24719 0.97621 0.97070 1.01153 1.69639 1.23450 1.15878 1.49047 0.86184 0.79558 0.81214 0.79193 1.21680 1.21753 1.20683 1.20632 0.95427 0.94296 0.98603 1.21001 0.94245 0.98808 0.94257 1.21099 1.01039 0.95325 0.96387 1.20476 0.95554 0.97338 0.91398 1.98355 1.84077 1.82528 1.39485 1.20810 0.96530 1.02728 0.97068 1.17232 0.84196 0.95494 0.94113 1.91497 1.46161 1.87137 1.86199 0.93595 0.94064 0.91592 0.90414 0.93436 0.92888 0.93549 0.77918 0.93382 0.83390 0.84563 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.37 37.16 0.31 -2.01 16 2 C -0.11 -1.91 2.89 -90.62 -0.26 -2.17 16 3 C -0.15 -2.19 7.94 37.16 0.30 -1.90 16 4 C 0.22 4.20 2.16 -69.09 -0.15 4.05 16 5 H 0.06 1.32 7.61 -51.93 -0.40 0.92 16 6 N -0.72 -16.88 4.48 -54.56 -0.24 -17.12 16 7 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 11 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.09 -1.49 3.88 -104.55 -0.41 -1.90 16 16 C -0.06 -1.04 7.51 -39.60 -0.30 -1.33 16 17 C -0.12 -1.65 9.83 -39.54 -0.39 -2.04 16 18 C -0.02 -0.28 6.32 -39.51 -0.25 -0.53 16 19 Cl -0.07 -0.86 28.96 -51.86 -1.50 -2.36 16 20 C -0.15 -2.08 9.81 -39.48 -0.39 -2.46 16 21 C 0.11 1.72 5.88 -39.42 -0.23 1.48 16 22 F -0.13 -2.08 14.81 2.25 0.03 -2.05 16 23 H 0.05 0.71 6.22 -51.93 -0.32 0.38 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.22 7.75 -51.93 -0.40 0.82 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.05 0.70 5.88 -51.93 -0.31 0.39 16 28 H 0.05 0.78 7.99 -51.93 -0.41 0.37 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.38 9.35 5.53 -40.82 -0.23 9.12 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.15 2.53 6.21 -52.49 -0.33 2.20 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -27.63 296.09 -7.61 -35.25 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.05 Total: 6.93 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.01 Total: -15.72 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.48 Total: -43.33 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.63 -7.61 -35.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180266713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.884 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds