Wall clock time and date at job start Mon Mar 30 2020 01:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47312 * 2 1 4 4 C 1.52997 * 109.47392 * 120.00412 * 2 1 3 5 5 H 1.08996 * 109.47004 * 184.99832 * 4 2 1 6 6 N 1.46499 * 109.46921 * 64.99764 * 4 2 1 7 7 C 1.36934 * 120.00045 * 86.95223 * 6 4 2 8 8 H 1.08002 * 120.00343 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00229 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99894 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00558 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47278 * 89.99724 * 11 9 7 13 13 H 1.48499 * 109.47417 * 210.00095 * 11 9 7 14 14 H 1.48504 * 109.46925 * 330.00419 * 11 9 7 15 15 C 1.50692 * 109.47065 * 304.99690 * 4 2 1 16 16 C 1.38233 * 120.00170 * 91.77848 * 15 4 2 17 17 C 1.38196 * 120.04010 * 180.02562 * 16 15 4 18 18 C 1.38382 * 120.04055 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 120.00351 * 179.97438 * 18 17 16 20 20 C 1.38300 * 119.99918 * 359.97438 * 18 17 16 21 21 C 1.38451 * 120.00382 * 271.79970 * 15 4 2 22 22 F 1.35105 * 120.01357 * 359.96236 * 21 15 4 23 23 H 1.09006 * 109.46431 * 299.99851 * 1 2 3 24 24 H 1.09001 * 109.47284 * 59.99278 * 1 2 3 25 25 H 1.08996 * 109.47479 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46779 * 240.00425 * 2 1 3 27 27 H 1.09000 * 109.46852 * 60.00470 * 3 2 1 28 28 H 1.09002 * 109.46685 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47014 * 300.00524 * 3 2 1 30 30 H 0.97001 * 120.00046 * 266.95173 * 6 4 2 31 31 H 0.96999 * 120.00447 * 180.02562 * 10 9 7 32 32 H 1.07998 * 119.97843 * 0.02562 * 16 15 4 33 33 H 1.08000 * 119.98236 * 180.28235 * 17 16 15 34 34 H 1.07996 * 120.01900 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1263 -0.6444 1.2950 6 7 1.6524 -2.1329 1.1904 7 6 2.4549 -3.0370 0.5473 8 1 3.3734 -2.7095 0.0830 9 6 2.0879 -4.3747 0.4920 10 7 0.9683 -4.7738 1.0573 11 14 3.1829 -5.6083 -0.3846 12 1 4.1618 -6.1735 0.5786 13 1 2.3483 -6.7028 -0.9418 14 1 3.9095 -4.9292 -1.4875 15 6 1.4392 -0.0861 2.4765 16 6 0.2579 -0.5765 3.0007 17 6 -0.2940 0.0058 4.1260 18 6 0.3349 1.0808 4.7289 19 17 -0.3596 1.8120 6.1420 20 6 1.5169 1.5728 4.2058 21 6 2.0701 0.9891 3.0789 22 9 3.2249 1.4685 2.5670 23 1 -0.3632 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 0.8273 -2.4270 1.6070 31 1 0.7120 -5.7085 1.0191 32 1 -0.2339 -1.4152 2.5307 33 1 -1.2146 -0.3811 4.5374 34 1 2.0078 2.4121 4.6759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180266713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:09 Heat of formation + Delta-G solvation = -39.070885 kcal Electronic energy + Delta-G solvation = -19020.649341 eV Core-core repulsion = 15893.211134 eV Total energy + Delta-G solvation = -3127.438207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.96192 -40.69071 -38.27839 -37.12690 -35.10468 -32.70393 -31.70584 -31.25006 -28.01603 -27.17377 -25.10109 -23.62914 -23.13557 -20.39652 -19.52203 -18.57263 -17.60426 -17.21458 -16.89000 -16.37706 -15.92275 -15.52320 -15.31032 -15.06325 -14.84378 -14.37319 -14.18787 -14.07961 -13.47737 -12.99906 -12.90354 -12.86615 -12.58908 -12.47173 -12.42722 -12.14148 -12.06349 -11.95844 -11.83987 -11.55301 -11.36189 -10.94932 -9.95885 -9.55943 -9.01248 -7.94559 -5.22301 -0.02380 0.09028 0.99766 1.48516 1.48974 1.57223 2.42148 2.56212 3.23817 3.39471 3.61278 3.72271 3.86731 4.02324 4.09402 4.28014 4.29310 4.41043 4.60205 4.70965 4.83222 4.88010 4.96871 4.98328 5.09026 5.11321 5.17289 5.29832 5.36767 5.50434 5.54468 5.60261 5.71705 6.27692 7.35370 8.05754 8.32500 9.28618 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.005639 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.265736 B = 4964.197550 C = 5533.865848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C -0.136 4.136 4 C 0.215 3.785 5 H 0.046 0.954 6 N -0.726 5.726 7 C -0.239 4.239 8 H 0.072 0.928 9 C -0.067 4.067 10 N -0.965 5.965 11 Si 0.967 3.033 12 H -0.290 1.290 13 H -0.295 1.295 14 H -0.272 1.272 15 C -0.104 4.104 16 C -0.075 4.075 17 C -0.112 4.112 18 C -0.017 4.017 19 Cl -0.051 7.051 20 C -0.141 4.141 21 C 0.103 3.897 22 F -0.134 7.134 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.379 0.621 31 H 0.251 0.749 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 15.120 6.001 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.106 3.894 5 H 0.064 0.936 6 N -0.368 5.368 7 C -0.371 4.371 8 H 0.090 0.910 9 C -0.260 4.260 10 N -0.615 5.615 11 Si 0.797 3.203 12 H -0.217 1.217 13 H -0.222 1.222 14 H -0.197 1.197 15 C -0.106 4.106 16 C -0.093 4.093 17 C -0.130 4.130 18 C -0.044 4.044 19 Cl -0.022 7.022 20 C -0.161 4.161 21 C 0.083 3.917 22 F -0.113 7.113 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.214 0.786 31 H 0.060 0.940 32 H 0.149 0.851 33 H 0.175 0.825 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.210 15.118 6.009 16.418 hybrid contribution 0.438 -1.111 -0.385 1.255 sum -1.773 14.007 5.624 15.198 Atomic orbital electron populations 1.21695 0.94880 1.00862 1.01453 1.21621 0.96831 0.96030 0.98165 1.21832 1.00721 0.95008 1.01863 1.19242 0.96134 0.83879 0.90146 0.93581 1.42597 1.25949 1.02215 1.66039 1.19543 1.02166 0.89103 1.26308 0.91010 1.25421 0.99067 0.98773 1.02730 1.69776 1.25097 1.15717 1.50957 0.85234 0.77866 0.78927 0.78296 1.21688 1.22195 1.19669 1.20376 0.96390 0.95576 0.98268 1.20864 0.94291 0.98826 0.95348 1.21265 1.01494 0.95005 0.95282 1.20557 0.95245 0.96829 0.91741 1.98371 1.83692 1.82032 1.38058 1.21034 0.96300 1.02789 0.95929 1.17267 0.84181 0.95456 0.94758 1.91489 1.46337 1.87100 1.86374 0.92430 0.92239 0.94315 0.92771 0.92872 0.92971 0.91639 0.78604 0.93968 0.85114 0.82479 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.37 71.98 0.60 -3.70 16 2 C -0.11 -3.69 2.89 -10.79 -0.03 -3.72 16 3 C -0.14 -3.89 7.94 71.98 0.57 -3.32 16 4 C 0.21 8.50 2.16 44.24 0.10 8.59 16 5 H 0.05 1.96 7.61 -2.39 -0.02 1.94 16 6 N -0.73 -35.24 4.48 -326.52 -1.46 -36.70 16 7 C -0.24 -13.01 9.93 84.03 0.83 -12.17 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 10 N -0.97 -57.22 13.06 21.65 0.28 -56.94 16 11 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 C -0.10 -3.52 3.88 -19.82 -0.08 -3.60 16 16 C -0.07 -2.37 7.51 22.26 0.17 -2.20 16 17 C -0.11 -2.88 9.83 22.29 0.22 -2.66 16 18 C -0.02 -0.40 6.32 22.32 0.14 -0.26 16 19 Cl -0.05 -1.02 28.96 -2.72 -0.08 -1.10 16 20 C -0.14 -3.47 9.81 22.34 0.22 -3.25 16 21 C 0.10 3.07 5.88 22.37 0.13 3.21 16 22 F -0.13 -4.07 14.81 44.97 0.67 -3.40 16 23 H 0.06 1.73 6.22 -2.38 -0.01 1.71 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.46 7.75 -2.39 -0.02 1.44 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.46 5.88 -2.39 -0.01 1.45 16 28 H 0.05 1.48 7.99 -2.39 -0.02 1.47 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.38 19.15 5.53 -92.71 -0.51 18.64 16 31 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.13 4.61 6.21 -2.91 -0.02 4.60 16 33 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -59.28 296.09 5.38 -53.90 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.61 Total: 23.00 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.34 Total: -26.39 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -1.18 Total: -93.65 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.67 Total: -3.40 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -59.28 5.38 -53.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180266713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.830 kcal (2) G-P(sol) polarization free energy of solvation -59.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds