Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99823 * 2 1 4 4 C 1.52999 * 109.47266 * 269.99659 * 3 2 1 5 5 C 1.53003 * 109.47096 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46855 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00160 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99806 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00028 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47522 * 89.99661 * 10 8 6 12 12 H 1.48502 * 109.47371 * 209.99815 * 10 8 6 13 13 H 1.48501 * 109.47335 * 329.99760 * 10 8 6 14 14 C 1.39815 * 119.99906 * 180.02562 * 2 1 3 15 15 C 1.38899 * 120.04196 * 179.97438 * 14 2 1 16 16 C 1.38119 * 119.97331 * 179.97438 * 15 14 2 17 17 C 1.38451 * 120.06259 * 0.02562 * 16 15 14 18 18 F 1.35103 * 119.95896 * 180.27747 * 17 16 15 19 19 C 1.38565 * 120.08616 * 0.02562 * 17 16 15 20 20 Cl 1.73603 * 119.98470 * 179.97438 * 19 17 16 21 21 C 1.38237 * 120.02353 * 359.97438 * 19 17 16 22 22 H 1.09001 * 109.47377 * 270.00066 * 1 2 3 23 23 H 1.09003 * 109.47039 * 30.00283 * 1 2 3 24 24 H 1.09004 * 109.47024 * 149.99764 * 1 2 3 25 25 H 1.08998 * 109.47374 * 30.00285 * 3 2 1 26 26 H 1.09000 * 109.46828 * 150.00038 * 3 2 1 27 27 H 1.08998 * 109.47435 * 300.00588 * 4 3 2 28 28 H 1.09000 * 109.46888 * 60.00416 * 4 3 2 29 29 H 1.09004 * 109.46909 * 300.00230 * 5 4 3 30 30 H 1.09000 * 109.47079 * 60.00329 * 5 4 3 31 31 H 0.96996 * 120.00281 * 180.02562 * 9 8 6 32 32 H 1.07998 * 120.01596 * 0.02562 * 15 14 2 33 33 H 1.07995 * 119.97053 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.02604 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0352 -1.4424 6 6 3.4687 3.4705 -2.8633 7 1 3.1176 2.8628 -3.6842 8 6 4.1473 4.6439 -3.1152 9 7 4.5754 5.3836 -2.1156 10 14 4.4574 5.1839 -4.8763 11 1 3.3277 6.0281 -5.3415 12 1 5.7184 5.9658 -4.9396 13 1 4.5727 3.9872 -5.7480 14 6 2.1640 -1.2108 -0.0005 15 6 3.5530 -1.2119 -0.0011 16 6 4.2422 -2.4089 -0.0011 17 6 3.5498 -3.6078 -0.0011 18 9 4.2260 -4.7774 0.0046 19 6 2.1641 -3.6097 -0.0016 20 17 1.2986 -5.1146 -0.0023 21 6 1.4708 -2.4138 -0.0016 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 3.0416 0.9508 -1.9563 28 1 1.5001 1.8408 -1.9563 29 1 2.6293 3.7950 -0.9284 30 1 4.1705 2.9044 -0.9287 31 1 5.0524 6.2094 -2.2928 32 1 4.0940 -0.2771 -0.0007 33 1 5.3221 -2.4096 -0.0011 34 1 0.3908 -2.4152 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181509869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = -46.986863 kcal Electronic energy + Delta-G solvation = -17876.089160 eV Core-core repulsion = 14748.307690 eV Total energy + Delta-G solvation = -3127.781469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.77004 -40.69071 -38.04989 -37.16736 -35.58903 -33.51544 -31.96312 -30.47827 -29.09417 -26.72443 -24.87881 -23.76322 -22.47551 -21.53340 -19.09453 -18.51836 -17.70745 -17.61652 -16.65996 -16.54126 -16.36365 -15.65676 -15.43894 -15.20322 -14.87127 -14.43575 -14.07832 -13.89552 -13.77306 -13.64875 -13.11544 -12.97516 -12.75498 -12.64494 -12.56602 -12.42949 -12.17335 -11.89279 -11.49409 -11.40138 -11.27075 -10.57499 -10.53835 -9.95502 -8.28864 -8.16266 -6.29664 0.04030 0.26234 0.95069 1.40425 1.41053 1.51920 2.13828 2.41766 2.54013 3.14067 3.25387 3.69609 3.95807 4.10510 4.16808 4.24132 4.36851 4.56705 4.64039 4.65868 4.74330 4.86896 4.89534 4.97709 5.01993 5.16817 5.19768 5.24786 5.53358 5.60407 5.74956 5.87273 6.19480 6.30783 6.43100 6.87069 7.39560 8.91572 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.003658 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.004071 B = 7651.586651 C = 8085.274658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.624 5.624 3 C 0.128 3.872 4 C -0.110 4.110 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.221 3.779 15 C -0.175 4.175 16 C -0.086 4.086 17 C 0.020 3.980 18 F -0.144 7.144 19 C -0.027 4.027 20 Cl -0.053 7.053 21 C -0.171 4.171 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.048 0.952 29 H -0.002 1.002 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -16.406 6.373 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.006 3.994 4 C -0.148 4.148 5 C -0.011 4.011 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.116 3.884 15 C -0.197 4.197 16 C -0.106 4.106 17 C -0.002 4.002 18 F -0.123 7.123 19 C -0.055 4.055 20 Cl -0.024 7.024 21 C -0.194 4.194 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.337 -16.236 6.424 18.940 hybrid contribution 0.445 0.312 -0.880 1.035 sum -6.891 -15.924 5.544 18.215 Atomic orbital electron populations 1.21887 0.77882 1.03670 1.02411 1.46789 1.06116 1.02298 1.77920 1.21538 0.97238 0.84115 0.96541 1.21804 0.99460 0.97184 0.96391 1.18941 0.94382 0.92406 0.95369 1.21671 1.35814 1.06630 0.93930 0.92782 1.25877 0.95465 0.96785 1.01315 1.70065 1.39385 1.14739 1.32852 0.85553 0.77738 0.78449 0.79968 1.19821 1.20738 1.19109 1.17873 0.91298 0.86163 0.93070 1.20892 0.92578 0.98919 1.07321 1.21034 1.01643 0.89439 0.98441 1.17285 0.88279 0.82171 1.12481 1.91462 1.80000 1.46011 1.94789 1.20725 0.90432 0.88612 1.05722 1.98366 1.76224 1.31013 1.96843 1.20477 1.01181 0.88082 1.09654 0.91555 0.90874 0.90204 0.89838 0.90516 0.93704 0.93293 0.98392 0.98387 0.92771 0.84232 0.82337 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 10.19 127.77 1.30 2.84 16 2 N -0.62 -15.37 3.01 -722.13 -2.17 -17.55 16 3 C 0.13 3.73 5.16 86.38 0.45 4.17 16 4 C -0.11 -4.11 5.48 30.59 0.17 -3.95 16 5 C 0.03 1.32 4.97 29.85 0.15 1.46 16 6 C -0.54 -29.99 9.11 25.60 0.23 -29.75 16 7 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 10 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 C 0.22 5.54 6.55 38.17 0.25 5.79 16 15 C -0.17 -4.47 9.21 22.40 0.21 -4.27 16 16 C -0.09 -2.06 10.02 22.29 0.22 -1.84 16 17 C 0.02 0.51 7.27 22.40 0.16 0.67 16 18 F -0.14 -3.84 16.83 44.97 0.76 -3.08 16 19 C -0.03 -0.64 6.32 22.35 0.14 -0.50 16 20 Cl -0.05 -1.18 28.61 -2.72 -0.08 -1.25 16 21 C -0.17 -3.86 8.99 22.41 0.20 -3.65 16 22 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.36 8.07 -2.39 -0.02 1.34 16 24 H 0.08 1.24 6.20 -2.39 -0.01 1.23 16 25 H 0.08 2.29 8.07 -2.39 -0.02 2.28 16 26 H 0.08 2.20 6.20 -2.39 -0.01 2.18 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.14 3.67 6.14 -2.91 -0.02 3.65 16 33 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.16 2.89 6.14 -2.91 -0.02 2.87 16 Total: -1.00 -61.67 306.96 5.86 -55.81 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.10 Total: 3.62 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 3.94 Total: -28.36 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.89 Total: -72.24 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.08 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.25 kcal Total: -61.67 5.86 -55.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181509869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.822 kcal (2) G-P(sol) polarization free energy of solvation -61.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds