Wall clock time and date at job start Mon Mar 30 2020 00:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48502 * 109.46812 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47326 * 300.00214 * 3 2 1 6 6 H 1.48499 * 109.46979 * 60.00327 * 3 2 1 7 7 C 1.37882 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00342 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99581 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46748 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47169 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47407 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00332 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47381 * 180.02562 * 13 12 11 15 15 C 1.38225 * 119.99781 * 260.02537 * 14 13 12 16 16 C 1.38204 * 120.03073 * 179.97438 * 15 14 13 17 17 C 1.38381 * 120.04362 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.00084 * 179.97438 * 17 16 15 19 19 C 1.38296 * 119.99810 * 359.72321 * 17 16 15 20 20 C 1.38440 * 119.99463 * 80.00216 * 14 13 12 21 21 F 1.35104 * 120.02287 * 359.97438 * 20 14 13 22 22 H 0.96995 * 119.99852 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46973 * 60.00559 * 9 7 2 24 24 H 1.08995 * 109.47221 * 299.99747 * 9 7 2 25 25 H 1.09004 * 109.46897 * 59.99977 * 10 9 7 26 26 H 1.09001 * 109.46874 * 300.00247 * 10 9 7 27 27 H 1.08998 * 109.47236 * 59.99705 * 11 10 9 28 28 H 1.09009 * 109.46966 * 300.00387 * 11 10 9 29 29 H 1.00907 * 110.99966 * 56.04792 * 12 11 10 30 30 H 1.09002 * 109.46912 * 60.00105 * 13 12 11 31 31 H 1.08995 * 109.47513 * 300.00404 * 13 12 11 32 32 H 1.07992 * 119.98342 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.97626 * 180.02562 * 16 15 14 34 34 H 1.07994 * 120.02078 * 180.27193 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7346 -7.3950 -0.0018 14 6 2.7441 -8.5140 -0.0018 15 6 3.0531 -9.1660 -1.1808 16 6 3.9791 -10.1919 -1.1817 17 6 4.5977 -10.5678 -0.0023 18 17 5.7603 -11.8571 -0.0046 19 6 4.2935 -9.9131 1.1772 20 6 3.3623 -8.8884 1.1790 21 9 3.0612 -8.2507 2.3313 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.8539 -5.0446 -0.8913 28 1 0.8533 -5.0451 0.8886 29 1 3.0698 -6.0371 0.7796 30 1 1.1094 -7.4692 -0.8916 31 1 1.1100 -7.4697 0.8883 32 1 2.5712 -8.8730 -2.1018 33 1 4.2202 -10.7004 -2.1035 34 1 4.7793 -10.2033 2.0971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189317974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:22 Heat of formation + Delta-G solvation = -48.082570 kcal Electronic energy + Delta-G solvation = -17322.041321 eV Core-core repulsion = 14194.212338 eV Total energy + Delta-G solvation = -3127.828983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.20495 -39.58071 -37.08150 -36.28202 -33.73580 -32.12845 -31.08721 -30.23885 -26.79692 -24.73028 -23.34888 -22.33211 -21.67239 -20.11353 -18.07402 -17.05969 -16.45966 -16.15819 -15.97701 -15.41827 -14.93513 -14.61413 -14.21029 -14.17761 -13.82765 -13.50853 -13.46032 -12.74245 -12.28873 -12.19407 -11.72182 -11.53001 -11.42942 -11.37278 -11.33132 -10.85239 -10.58732 -10.47796 -9.70364 -9.41554 -9.30420 -9.06661 -8.92761 -8.33812 -8.25755 -5.98705 -4.00605 0.61186 0.75351 1.65197 3.06150 3.32317 3.39648 3.44397 3.91491 4.28578 4.30581 4.47679 4.56445 4.65019 4.81680 5.12768 5.27079 5.37274 5.48147 5.55344 5.62231 5.75013 5.78276 5.85714 6.03202 6.29628 6.36775 6.69214 6.72436 7.12815 7.23743 7.50957 7.69677 7.84032 8.01798 8.45106 9.06820 9.63432 11.12833 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.002682 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.555444 B =10437.670897 C =10521.458737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.685 5.685 13 C 0.094 3.906 14 C -0.102 4.102 15 C -0.060 4.060 16 C -0.120 4.120 17 C -0.012 4.012 18 Cl -0.062 7.062 19 C -0.148 4.148 20 C 0.117 3.883 21 F -0.130 7.130 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.339 0.661 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -24.569 -0.430 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.315 5.315 13 C -0.035 4.035 14 C -0.104 4.104 15 C -0.079 4.079 16 C -0.139 4.139 17 C -0.039 4.039 18 Cl -0.033 7.033 19 C -0.167 4.167 20 C 0.096 3.904 21 F -0.108 7.108 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.157 0.843 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.122 -24.519 -1.068 25.554 hybrid contribution 0.182 0.892 1.204 1.509 sum 7.304 -23.627 0.137 24.731 Atomic orbital electron populations 1.69976 1.06064 1.26453 1.51149 1.25037 0.94856 0.99293 0.95395 0.86536 0.80159 0.83779 0.77545 1.19709 1.21016 1.21050 1.21298 0.93109 0.91032 1.50180 0.92603 1.19073 0.94003 0.91358 0.97145 1.21629 0.99221 0.92829 1.00822 1.22173 0.94069 0.90578 1.00150 1.60689 1.20286 1.00584 1.49986 1.20858 0.93261 0.87267 1.02144 1.20097 0.99531 0.98701 0.92048 1.20945 0.95862 0.93535 0.97586 1.21132 0.97216 0.98350 0.97207 1.20591 0.95310 0.93351 0.94647 1.98386 1.57652 1.48414 1.98861 1.20928 0.99763 0.97055 0.98961 1.17367 0.97336 0.93625 0.82027 1.91541 1.91832 1.80359 1.47080 0.93094 0.96531 0.96778 0.93606 0.92482 0.91214 0.95491 0.84330 0.89361 0.93868 0.83682 0.84176 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 11 C 0.06 1.00 5.68 -3.83 -0.02 0.98 16 12 N -0.68 -10.01 6.49 -115.06 -0.75 -10.75 16 13 C 0.09 1.11 5.53 -4.97 -0.03 1.09 16 14 C -0.10 -1.09 5.40 -104.55 -0.56 -1.66 16 15 C -0.06 -0.53 9.67 -39.60 -0.38 -0.92 16 16 C -0.12 -0.98 9.83 -39.54 -0.39 -1.37 16 17 C -0.01 -0.11 6.32 -39.51 -0.25 -0.36 16 18 Cl -0.06 -0.51 28.96 -51.86 -1.50 -2.01 16 19 C -0.15 -1.41 9.81 -39.48 -0.39 -1.80 16 20 C 0.12 1.28 7.24 -39.42 -0.29 0.99 16 21 F -0.13 -1.59 16.66 2.25 0.04 -1.55 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.34 4.96 8.72 -39.29 -0.34 4.62 16 30 H 0.09 0.95 8.01 -51.93 -0.42 0.53 16 31 H 0.04 0.52 7.94 -51.93 -0.41 0.11 16 32 H 0.15 1.03 8.04 -52.49 -0.42 0.61 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -30.35 314.41 -9.28 -39.62 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.52 Total: -1.75 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.00 Total: -18.68 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.01 Total: -37.23 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.35 -9.28 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189317974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.459 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds