Wall clock time and date at job start Mon Mar 30 2020 00:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48502 * 109.46812 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47326 * 300.00214 * 3 2 1 6 6 H 1.48499 * 109.46979 * 60.00327 * 3 2 1 7 7 C 1.37882 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00342 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99581 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46748 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47169 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47407 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00332 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47381 * 180.02562 * 13 12 11 15 15 C 1.38225 * 119.99781 * 260.02537 * 14 13 12 16 16 C 1.38204 * 120.03073 * 179.97438 * 15 14 13 17 17 C 1.38381 * 120.04362 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.00084 * 179.97438 * 17 16 15 19 19 C 1.38296 * 119.99810 * 359.72321 * 17 16 15 20 20 C 1.38440 * 119.99463 * 80.00216 * 14 13 12 21 21 F 1.35104 * 120.02287 * 359.97438 * 20 14 13 22 22 H 0.96995 * 119.99852 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46973 * 60.00559 * 9 7 2 24 24 H 1.08995 * 109.47221 * 299.99747 * 9 7 2 25 25 H 1.09004 * 109.46897 * 59.99977 * 10 9 7 26 26 H 1.09001 * 109.46874 * 300.00247 * 10 9 7 27 27 H 1.08998 * 109.47236 * 59.99705 * 11 10 9 28 28 H 1.09009 * 109.46966 * 300.00387 * 11 10 9 29 29 H 1.00907 * 110.99966 * 56.04792 * 12 11 10 30 30 H 1.09002 * 109.46912 * 60.00105 * 13 12 11 31 31 H 1.08995 * 109.47513 * 300.00404 * 13 12 11 32 32 H 1.07992 * 119.98342 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.97626 * 180.02562 * 16 15 14 34 34 H 1.07994 * 120.02078 * 180.27193 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7346 -7.3950 -0.0018 14 6 2.7441 -8.5140 -0.0018 15 6 3.0531 -9.1660 -1.1808 16 6 3.9791 -10.1919 -1.1817 17 6 4.5977 -10.5678 -0.0023 18 17 5.7603 -11.8571 -0.0046 19 6 4.2935 -9.9131 1.1772 20 6 3.3623 -8.8884 1.1790 21 9 3.0612 -8.2507 2.3313 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.8539 -5.0446 -0.8913 28 1 0.8533 -5.0451 0.8886 29 1 3.0698 -6.0371 0.7796 30 1 1.1094 -7.4692 -0.8916 31 1 1.1100 -7.4697 0.8883 32 1 2.5712 -8.8730 -2.1018 33 1 4.2202 -10.7004 -2.1035 34 1 4.7793 -10.2033 2.0971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189317974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:22 Heat of formation + Delta-G solvation = -65.324451 kcal Electronic energy + Delta-G solvation = -17322.788985 eV Core-core repulsion = 14194.212338 eV Total energy + Delta-G solvation = -3128.576647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.06608 -40.31956 -37.99453 -37.34206 -35.55861 -33.68154 -31.95380 -31.46268 -28.39513 -26.10998 -24.09480 -23.95017 -22.56704 -21.83200 -18.84447 -18.50225 -17.86182 -17.15577 -16.88336 -16.56929 -16.52672 -15.83675 -15.52947 -15.20575 -14.82820 -14.48049 -14.39028 -14.22198 -13.76940 -13.42583 -13.27211 -12.87607 -12.63051 -12.49544 -12.34607 -12.23662 -12.18102 -12.02452 -11.54658 -11.39609 -11.11265 -10.55920 -10.04616 -9.76470 -9.41311 -8.20527 -6.31313 -0.13178 0.04579 0.97319 1.40214 1.40341 1.54101 2.32447 2.41336 3.12687 3.15780 3.26845 3.60434 3.65732 3.90756 4.07634 4.22932 4.31161 4.43839 4.50690 4.63463 4.71656 4.80667 4.94489 4.97297 5.07807 5.08593 5.22417 5.27814 5.51687 5.64327 5.74608 5.85750 5.94937 6.26363 6.30520 6.85747 7.37940 8.91624 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.002682 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.555444 B =10437.670897 C =10521.458737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.684 5.684 13 C 0.095 3.905 14 C -0.114 4.114 15 C -0.058 4.058 16 C -0.113 4.113 17 C -0.016 4.016 18 Cl -0.055 7.055 19 C -0.151 4.151 20 C 0.098 3.902 21 F -0.143 7.143 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.010 1.010 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.023 0.977 29 H 0.339 0.661 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -25.305 -1.226 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.315 5.315 13 C -0.033 4.033 14 C -0.115 4.115 15 C -0.077 4.077 16 C -0.132 4.132 17 C -0.043 4.043 18 Cl -0.026 7.026 19 C -0.170 4.170 20 C 0.078 3.922 21 F -0.122 7.122 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.009 0.991 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.041 0.959 29 H 0.156 0.844 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.360 -25.279 -1.863 26.691 hybrid contribution -0.190 1.031 1.436 1.778 sum 8.170 -24.249 -0.426 25.592 Atomic orbital electron populations 1.70099 1.07769 1.27726 1.51818 1.25993 0.95806 1.03398 0.94744 0.85389 0.79051 0.78718 0.77838 1.18664 1.20225 1.20344 1.21732 0.93522 0.92459 1.50350 0.92345 1.18974 0.94402 0.92994 0.94882 1.21377 0.98065 0.92975 1.00678 1.21878 0.93875 0.89828 1.00156 1.60625 1.19810 1.01032 1.49988 1.20884 0.93622 0.86208 1.02604 1.20060 0.99837 0.98885 0.92754 1.21193 0.95702 0.93191 0.97573 1.21425 0.96184 0.97743 0.97846 1.20735 0.95397 0.93398 0.94754 1.98392 1.57336 1.47981 1.98847 1.21048 0.99441 0.96706 0.99798 1.17577 0.98357 0.94456 0.81818 1.91503 1.92081 1.80761 1.47826 0.92745 0.98669 0.99130 0.93538 0.92662 0.90941 0.95864 0.84399 0.87989 0.94319 0.81712 0.81745 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.90 5.41 30.59 0.17 -3.73 16 11 C 0.07 2.43 5.68 86.30 0.49 2.92 16 12 N -0.68 -19.41 6.49 -517.95 -3.36 -22.77 16 13 C 0.10 2.16 5.53 85.56 0.47 2.63 16 14 C -0.11 -2.28 5.40 -19.82 -0.11 -2.39 16 15 C -0.06 -0.89 9.67 22.26 0.22 -0.67 16 16 C -0.11 -1.55 9.83 22.30 0.22 -1.33 16 17 C -0.02 -0.25 6.32 22.32 0.14 -0.11 16 18 Cl -0.05 -0.79 28.96 -2.72 -0.08 -0.87 16 19 C -0.15 -2.70 9.81 22.34 0.22 -2.48 16 20 C 0.10 2.08 7.24 22.37 0.16 2.24 16 21 F -0.14 -3.52 16.66 44.97 0.75 -2.77 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.34 9.72 8.72 -89.69 -0.78 8.94 16 30 H 0.10 2.01 8.01 -2.39 -0.02 1.99 16 31 H 0.04 0.92 7.94 -2.39 -0.02 0.90 16 32 H 0.17 1.82 8.04 -2.91 -0.02 1.80 16 33 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -64.80 314.41 2.76 -62.04 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.32 Total: 6.98 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 2.82 Total: -32.33 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.08 Total: -79.87 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.75 Total: -2.77 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -64.80 2.76 -62.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189317974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.289 kcal (2) G-P(sol) polarization free energy of solvation -64.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds