Wall clock time and date at job start Mon Mar 30 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29031 * 124.91736 * 89.99650 * 4 3 2 6 6 C 1.31780 * 117.12711 * 179.97438 * 5 4 3 7 7 C 1.50702 * 122.74877 * 180.02562 * 6 5 4 8 8 S 1.81394 * 109.47138 * 89.99983 * 7 6 5 9 9 C 1.81405 * 102.99825 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46885 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47044 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99335 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99949 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00104 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46958 * 59.99872 * 15 13 11 17 17 H 1.48498 * 109.46897 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47319 * 299.99732 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 6 5 4 20 20 S 1.70980 * 124.91855 * 269.69899 * 4 3 2 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08997 * 109.46852 * 210.00565 * 7 6 5 29 29 H 1.08995 * 109.46759 * 329.99855 * 7 6 5 30 30 H 1.09000 * 109.47150 * 300.00351 * 9 8 7 31 31 H 1.08995 * 109.46787 * 60.00496 * 9 8 7 32 32 H 1.09000 * 109.47493 * 300.00117 * 10 9 8 33 33 H 1.09000 * 109.47074 * 60.00152 * 10 9 8 34 34 H 0.97001 * 119.99673 * 180.02562 * 14 13 11 35 35 H 1.07997 * 126.03814 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2851 1.4427 -1.0590 6 6 5.5908 1.4433 -0.8809 7 6 6.5698 1.4441 -2.0266 8 16 6.9618 3.1547 -2.4858 9 6 8.1334 2.9511 -3.8557 10 6 8.5681 4.3273 -4.3637 11 6 9.5410 4.1583 -5.5021 12 1 9.8209 3.1682 -5.8306 13 6 10.0738 5.2674 -6.1241 14 7 9.7325 6.4730 -5.7243 15 14 11.2792 5.0578 -7.5357 16 1 10.6250 4.3078 -8.6379 17 1 11.7011 6.3935 -8.0287 18 1 12.4690 4.3055 -7.0631 19 6 5.9756 1.4432 0.3989 20 16 4.5262 1.4498 1.4009 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 7.4826 0.9306 -1.7248 29 1 6.1295 0.9303 -2.8810 30 1 9.0071 2.4000 -3.5077 31 1 7.6544 2.3995 -4.6645 32 1 7.6947 4.8788 -4.7116 33 1 9.0473 4.8786 -3.5546 34 1 10.1071 7.2533 -6.1622 35 1 6.9948 1.4440 0.7559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190908945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:27 Heat of formation + Delta-G solvation = 11.908241 kcal Electronic energy + Delta-G solvation = -15184.837723 eV Core-core repulsion = 12627.867019 eV Total energy + Delta-G solvation = -2556.970704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98124 -35.59253 -33.66901 -31.96205 -30.84842 -28.49186 -27.55975 -25.23665 -23.46556 -21.68937 -21.02337 -19.81696 -17.79071 -16.50123 -15.87610 -15.54815 -15.32266 -14.77347 -14.48905 -14.12853 -13.91749 -13.62448 -13.38255 -12.92986 -12.83246 -12.31609 -12.11270 -11.87445 -11.59575 -11.49756 -11.43152 -11.05328 -10.99966 -10.62840 -10.17566 -9.72201 -9.66281 -9.63171 -9.48694 -9.05665 -8.67609 -8.40820 -7.11380 -6.04730 -4.09477 0.57674 1.24613 1.60209 1.95086 3.02473 3.25945 3.31230 3.35865 3.38404 3.85031 4.42693 4.57570 4.68047 4.69488 4.98940 5.09280 5.18905 5.24474 5.30597 5.38931 5.46148 5.49810 5.66143 5.72806 5.83270 5.93774 6.01044 6.05719 6.19657 6.74133 7.57734 7.66760 7.68289 7.91476 8.28530 8.95290 9.54222 11.06063 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039415 B = 0.002905 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.212814 B = 9636.356697 C = 9940.256459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.043 4.043 4 C 0.053 3.947 5 N -0.457 5.457 6 C 0.094 3.906 7 C -0.021 4.021 8 S -0.267 6.267 9 C -0.061 4.061 10 C 0.038 3.962 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.242 4.242 20 S 0.109 5.891 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 -13.354 15.402 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.084 4.084 4 C -0.226 4.226 5 N -0.172 5.172 6 C -0.038 4.038 7 C -0.171 4.171 8 S -0.039 6.039 9 C -0.209 4.209 10 C 0.000 4.000 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.384 4.384 20 S 0.364 5.636 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.526 -12.216 16.373 25.658 hybrid contribution 1.885 -1.091 -2.010 2.964 sum -13.641 -13.307 14.362 23.863 Atomic orbital electron populations 1.21763 0.94964 1.02018 1.02147 1.21523 0.96221 0.95100 1.02842 1.20332 0.84879 0.98778 1.04450 1.27013 1.01363 1.03469 0.90735 1.66024 1.04315 1.15300 1.31527 1.19465 0.89589 1.01601 0.93157 1.21728 0.98481 0.99291 0.97611 1.87164 1.60892 1.08302 1.47495 1.23729 0.96771 1.05736 0.94648 1.18894 0.96796 0.88223 0.96125 1.21059 1.25931 0.92752 1.16404 0.92482 1.25017 0.96742 0.95181 0.97341 1.69966 1.43797 0.97617 1.41561 0.86573 0.81320 0.77267 0.82349 1.20141 1.21167 1.20152 1.26792 1.03279 1.12724 0.95561 1.83834 0.97916 1.68806 1.13085 0.92392 0.92537 0.92294 0.91768 0.91189 0.88575 0.89642 0.88911 0.88753 0.91310 0.91260 0.95510 0.95552 0.92717 0.80313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.87 5.92 -26.73 -0.16 -1.02 16 3 C -0.04 -0.37 5.80 -27.89 -0.16 -0.53 16 4 C 0.05 0.63 6.64 -13.46 -0.09 0.54 16 5 N -0.46 -6.78 10.53 -8.06 -0.08 -6.87 16 6 C 0.09 1.37 6.00 -84.23 -0.51 0.87 16 7 C -0.02 -0.32 6.36 36.01 0.23 -0.09 16 8 S -0.27 -5.22 21.72 -107.50 -2.33 -7.55 16 9 C -0.06 -1.30 5.88 37.16 0.22 -1.09 16 10 C 0.04 1.02 4.98 -27.88 -0.14 0.88 16 11 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.24 -2.98 11.13 29.12 0.32 -2.66 16 20 S 0.11 1.12 23.18 -107.50 -2.49 -1.37 16 21 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.39 8.14 -51.92 -0.42 0.96 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -31.56 326.70 -10.06 -41.62 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -5.46 Total: -3.99 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -0.32 Total: -17.09 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.65 Total: -33.10 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -4.83 Total: -8.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.56 -10.06 -41.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190908945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.525 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds