Wall clock time and date at job start Mon Mar 30 2020 01:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29031 * 124.91736 * 89.99650 * 4 3 2 6 6 C 1.31780 * 117.12711 * 179.97438 * 5 4 3 7 7 C 1.50702 * 122.74877 * 180.02562 * 6 5 4 8 8 S 1.81394 * 109.47138 * 89.99983 * 7 6 5 9 9 C 1.81405 * 102.99825 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46885 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47044 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99335 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99949 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00104 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46958 * 59.99872 * 15 13 11 17 17 H 1.48498 * 109.46897 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47319 * 299.99732 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 6 5 4 20 20 S 1.70980 * 124.91855 * 269.69899 * 4 3 2 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08997 * 109.46852 * 210.00565 * 7 6 5 29 29 H 1.08995 * 109.46759 * 329.99855 * 7 6 5 30 30 H 1.09000 * 109.47150 * 300.00351 * 9 8 7 31 31 H 1.08995 * 109.46787 * 60.00496 * 9 8 7 32 32 H 1.09000 * 109.47493 * 300.00117 * 10 9 8 33 33 H 1.09000 * 109.47074 * 60.00152 * 10 9 8 34 34 H 0.97001 * 119.99673 * 180.02562 * 14 13 11 35 35 H 1.07997 * 126.03814 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2851 1.4427 -1.0590 6 6 5.5908 1.4433 -0.8809 7 6 6.5698 1.4441 -2.0266 8 16 6.9618 3.1547 -2.4858 9 6 8.1334 2.9511 -3.8557 10 6 8.5681 4.3273 -4.3637 11 6 9.5410 4.1583 -5.5021 12 1 9.8209 3.1682 -5.8306 13 6 10.0738 5.2674 -6.1241 14 7 9.7325 6.4730 -5.7243 15 14 11.2792 5.0578 -7.5357 16 1 10.6250 4.3078 -8.6379 17 1 11.7011 6.3935 -8.0287 18 1 12.4690 4.3055 -7.0631 19 6 5.9756 1.4432 0.3989 20 16 4.5262 1.4498 1.4009 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 7.4826 0.9306 -1.7248 29 1 6.1295 0.9303 -2.8810 30 1 9.0071 2.4000 -3.5077 31 1 7.6544 2.3995 -4.6645 32 1 7.6947 4.8788 -4.7116 33 1 9.0473 4.8786 -3.5546 34 1 10.1071 7.2533 -6.1622 35 1 6.9948 1.4440 0.7559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190908945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:26 Heat of formation + Delta-G solvation = -5.608583 kcal Electronic energy + Delta-G solvation = -15185.597310 eV Core-core repulsion = 12627.867019 eV Total energy + Delta-G solvation = -2557.730290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94492 -36.25858 -35.78839 -32.93560 -32.87727 -29.37970 -28.46968 -27.30628 -24.33449 -23.15561 -22.19090 -20.76595 -18.77067 -18.67246 -17.20841 -16.53384 -16.48067 -16.01839 -15.88704 -15.65818 -14.95950 -14.82486 -14.42363 -14.23173 -13.95317 -13.75600 -13.42788 -12.92329 -12.88732 -12.64712 -12.52717 -12.38210 -12.16018 -12.12733 -11.70474 -11.62258 -11.39499 -10.89372 -10.62879 -10.61123 -10.39855 -9.66040 -8.67677 -8.23813 -6.37900 -0.37048 0.37246 0.58055 0.71365 1.40358 1.44236 1.52243 1.64460 2.02905 2.40117 2.98011 3.09217 3.72995 3.93566 4.07403 4.09819 4.22657 4.24990 4.36400 4.39747 4.50505 4.60859 4.72370 4.80066 4.85192 4.94773 5.03190 5.22713 5.28630 5.36395 5.43799 5.47574 5.72393 6.09468 6.75034 6.76218 7.31639 8.87921 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039415 B = 0.002905 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.212814 B = 9636.356697 C = 9940.256459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.045 4.045 4 C 0.041 3.959 5 N -0.497 5.497 6 C 0.065 3.935 7 C -0.001 4.001 8 S -0.305 6.305 9 C -0.048 4.048 10 C 0.045 3.955 11 C -0.543 4.543 12 H 0.069 0.931 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.974 3.026 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.263 1.263 19 C -0.247 4.247 20 S 0.173 5.827 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.075 0.925 32 H -0.007 1.007 33 H -0.003 1.003 34 H 0.266 0.734 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 -14.988 16.400 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.086 4.086 4 C -0.237 4.237 5 N -0.212 5.212 6 C -0.067 4.067 7 C -0.151 4.151 8 S -0.076 6.076 9 C -0.196 4.196 10 C 0.007 3.993 11 C -0.582 4.582 12 H 0.087 0.913 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.797 3.203 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.389 4.389 20 S 0.429 5.571 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.011 0.989 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.669 -13.863 17.377 27.196 hybrid contribution 1.810 -0.614 -2.152 2.878 sum -13.859 -14.477 15.225 25.169 Atomic orbital electron populations 1.21748 0.93674 1.02589 1.02612 1.21484 0.97261 0.94089 1.02363 1.20502 0.83099 0.99757 1.05197 1.27549 1.02704 1.02352 0.91101 1.66013 1.04746 1.17044 1.33408 1.19409 0.89685 1.04050 0.93573 1.21707 0.99898 0.95313 0.98209 1.87216 1.60366 1.13418 1.46621 1.23357 0.97975 1.02521 0.95740 1.18665 0.95064 0.90510 0.95065 1.21521 1.26279 0.93455 1.16981 0.91306 1.26059 0.98743 0.94692 1.00345 1.70117 1.45259 0.98638 1.43207 0.85373 0.78839 0.77474 0.78596 1.18993 1.20842 1.18773 1.27146 1.05248 1.10959 0.95546 1.83587 0.95625 1.67064 1.10846 0.91790 0.91292 0.92628 0.90962 0.92942 0.89415 0.87290 0.86590 0.88876 0.89915 0.90664 0.98866 0.98452 0.92542 0.78613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.75 16 2 C -0.11 -1.49 5.92 30.59 0.18 -1.31 16 3 C -0.04 -0.70 5.80 29.85 0.17 -0.53 16 4 C 0.04 0.92 6.64 88.52 0.59 1.50 16 5 N -0.50 -14.47 10.53 -179.40 -1.89 -16.36 16 6 C 0.06 1.83 6.00 41.52 0.25 2.08 16 7 C 0.00 -0.04 6.36 71.24 0.45 0.42 16 8 S -0.30 -12.05 21.72 -56.49 -1.23 -13.27 16 9 C -0.05 -2.08 5.88 71.98 0.42 -1.65 16 10 C 0.05 2.50 4.98 29.85 0.15 2.65 16 11 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 12 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 13 C 0.00 0.00 5.46 84.65 0.46 0.46 16 14 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 15 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 C -0.25 -5.61 11.13 66.78 0.74 -4.87 16 20 S 0.17 3.13 23.18 -56.49 -1.31 1.82 16 21 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.12 2.86 8.12 -2.39 -0.02 2.84 16 29 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 30 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -69.50 326.70 3.31 -66.20 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.05 Total: 5.83 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 4.37 Total: -32.91 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.60 Total: -73.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -2.54 Total: -11.46 kcal Total: -69.50 3.31 -66.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190908945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.590 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds