Wall clock time and date at job start Mon Mar 30 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.50695 * 109.47224 * 119.99994 * 2 1 3 5 5 N 1.29034 * 124.91330 * 120.00034 * 4 2 1 6 6 C 1.31776 * 117.12603 * 179.73408 * 5 4 2 7 7 C 1.50694 * 122.75407 * 180.02562 * 6 5 4 8 8 S 1.81401 * 109.47251 * 89.99592 * 7 6 5 9 9 C 1.81397 * 103.00288 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47297 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47518 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99580 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00429 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00109 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00298 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46890 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47054 * 120.00132 * 15 13 11 18 18 H 1.48499 * 109.47563 * 240.00500 * 15 13 11 19 19 C 1.33639 * 114.49979 * 359.97438 * 6 5 4 20 20 S 1.70972 * 124.92008 * 299.69339 * 4 2 1 21 21 H 1.09006 * 109.46796 * 299.99651 * 1 2 3 22 22 H 1.08996 * 109.47320 * 59.99392 * 1 2 3 23 23 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46587 * 240.00739 * 2 1 3 25 25 H 1.08996 * 109.47653 * 300.00404 * 3 2 1 26 26 H 1.09006 * 109.47134 * 60.00556 * 3 2 1 27 27 H 1.09003 * 109.47303 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47932 * 209.99959 * 7 6 5 29 29 H 1.09005 * 109.46943 * 330.00126 * 7 6 5 30 30 H 1.09003 * 109.47219 * 300.00172 * 9 8 7 31 31 H 1.08998 * 109.46888 * 60.00019 * 9 8 7 32 32 H 1.09000 * 109.47578 * 300.00581 * 10 9 8 33 33 H 1.08998 * 109.47275 * 60.00086 * 10 9 8 34 34 H 0.96994 * 120.00159 * 179.97438 * 14 13 11 35 35 H 1.08002 * 126.03942 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7773 -1.7639 1.2225 6 6 3.1328 -2.2572 2.3916 7 6 4.0002 -3.4817 2.5302 8 16 5.7443 -2.9850 2.5781 9 6 6.6149 -4.5677 2.7439 10 6 8.1231 -4.3167 2.7998 11 6 8.8465 -5.6315 2.9383 12 1 8.2864 -6.5539 2.9816 13 6 10.2232 -5.6569 3.0086 14 7 10.9052 -4.5336 2.9553 15 14 11.1197 -7.2866 3.1809 16 1 10.1310 -8.3940 3.2181 17 1 12.0304 -7.4754 2.0232 18 1 11.9105 -7.2862 4.4378 19 6 2.6620 -1.5819 3.4443 20 16 1.7039 -0.2328 2.8389 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4426 -0.0005 28 1 3.7460 -4.0047 3.4520 29 1 3.8340 -4.1428 1.6796 30 1 6.2953 -5.0639 3.6603 31 1 6.3832 -5.2013 1.8879 32 1 8.4431 -3.8202 1.8838 33 1 8.3546 -3.6833 3.6561 34 1 11.8737 -4.5515 3.0051 35 1 2.8369 -1.8215 4.4828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190913659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:28 Heat of formation + Delta-G solvation = 14.753774 kcal Electronic energy + Delta-G solvation = -15373.039690 eV Core-core repulsion = 12816.192378 eV Total energy + Delta-G solvation = -2556.847312 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00989 -35.97316 -33.67028 -31.45812 -30.84471 -27.79841 -27.53351 -25.32222 -24.87584 -21.43136 -20.86748 -19.84511 -17.65729 -16.50501 -15.97984 -15.69450 -14.89300 -14.61661 -14.48301 -14.12191 -13.90835 -13.47993 -13.24319 -12.92329 -12.86690 -12.52808 -12.07760 -11.87698 -11.61236 -11.51812 -11.45376 -11.19854 -11.03073 -10.58285 -10.18806 -9.71847 -9.65830 -9.63023 -9.47886 -9.03958 -8.66363 -8.41535 -7.11129 -6.05109 -4.09669 0.59038 1.25668 1.62653 1.95746 3.03529 3.26322 3.28919 3.36536 3.40389 3.78528 4.42606 4.51636 4.69384 4.75175 4.99518 5.10023 5.23848 5.24661 5.30435 5.43148 5.45791 5.52569 5.62369 5.70759 5.86581 5.89940 6.01147 6.04576 6.19814 6.74255 7.58128 7.66677 7.69363 7.91456 8.28441 8.95591 9.54198 11.05766 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044816 B = 0.003004 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.626349 B = 9318.747442 C = 9474.295474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.021 4.021 3 C -0.148 4.148 4 C 0.058 3.942 5 N -0.459 5.459 6 C 0.093 3.907 7 C -0.021 4.021 8 S -0.267 6.267 9 C -0.061 4.061 10 C 0.038 3.962 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.244 4.244 20 S 0.113 5.887 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.549 10.228 -2.488 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 C -0.206 4.206 4 C -0.221 4.221 5 N -0.173 5.173 6 C -0.038 4.038 7 C -0.171 4.171 8 S -0.039 6.039 9 C -0.209 4.209 10 C -0.001 4.001 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.385 4.385 20 S 0.368 5.632 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.364 11.886 -2.586 25.458 hybrid contribution 0.719 -2.884 0.358 2.994 sum -21.645 9.001 -2.228 23.548 Atomic orbital electron populations 1.21921 0.93239 1.02654 1.02626 1.19831 0.95965 0.95514 0.92986 1.21932 1.02163 0.93930 1.02577 1.27063 0.99919 0.96319 0.98841 1.66044 1.12313 1.10550 1.28385 1.19452 0.99201 0.98563 0.86632 1.21729 0.94695 0.95256 1.05420 1.87160 0.99569 1.19845 1.97291 1.23728 1.01740 0.92356 1.03073 1.18902 0.84916 0.97750 0.98535 1.21134 0.91401 0.92386 1.51071 0.92377 1.25021 0.97614 0.96578 0.95112 1.69987 1.07020 1.25928 1.49995 0.86462 0.79714 0.83652 0.77732 1.19690 1.20886 1.20895 1.26818 1.06770 1.00330 1.04624 1.83740 1.48594 1.28918 1.01978 0.92239 0.91166 0.92033 0.87991 0.91151 0.92234 0.91728 0.88914 0.88761 0.91308 0.91261 0.95500 0.95545 0.92835 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.09 37.16 0.34 -0.64 16 2 C -0.02 -0.19 3.35 -91.77 -0.31 -0.49 16 3 C -0.15 -1.12 9.09 37.16 0.34 -0.78 16 4 C 0.06 0.69 6.03 -13.46 -0.08 0.61 16 5 N -0.46 -6.91 10.53 -8.06 -0.08 -6.99 16 6 C 0.09 1.38 6.00 -84.23 -0.51 0.87 16 7 C -0.02 -0.32 6.36 36.00 0.23 -0.09 16 8 S -0.27 -5.23 21.72 -107.50 -2.33 -7.57 16 9 C -0.06 -1.31 5.88 37.16 0.22 -1.09 16 10 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 11 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 C -0.24 -3.04 11.13 29.12 0.32 -2.72 16 20 S 0.11 1.17 22.53 -107.50 -2.42 -1.25 16 21 H 0.06 0.37 7.94 -51.93 -0.41 -0.04 16 22 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.42 7.92 -51.93 -0.41 0.00 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.23 8.12 -51.92 -0.42 0.81 16 29 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 31 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -31.71 324.92 -9.66 -41.37 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -5.44 Total: -3.89 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 0.00 Total: -16.92 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.65 Total: -33.21 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -4.76 Total: -8.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.71 -9.66 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190913659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.124 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds