Wall clock time and date at job start Mon Mar 30 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.50695 * 109.47224 * 119.99994 * 2 1 3 5 5 N 1.29034 * 124.91330 * 120.00034 * 4 2 1 6 6 C 1.31776 * 117.12603 * 179.73408 * 5 4 2 7 7 C 1.50694 * 122.75407 * 180.02562 * 6 5 4 8 8 S 1.81401 * 109.47251 * 89.99592 * 7 6 5 9 9 C 1.81397 * 103.00288 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47297 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47518 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99580 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00429 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00109 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00298 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46890 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47054 * 120.00132 * 15 13 11 18 18 H 1.48499 * 109.47563 * 240.00500 * 15 13 11 19 19 C 1.33639 * 114.49979 * 359.97438 * 6 5 4 20 20 S 1.70972 * 124.92008 * 299.69339 * 4 2 1 21 21 H 1.09006 * 109.46796 * 299.99651 * 1 2 3 22 22 H 1.08996 * 109.47320 * 59.99392 * 1 2 3 23 23 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46587 * 240.00739 * 2 1 3 25 25 H 1.08996 * 109.47653 * 300.00404 * 3 2 1 26 26 H 1.09006 * 109.47134 * 60.00556 * 3 2 1 27 27 H 1.09003 * 109.47303 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47932 * 209.99959 * 7 6 5 29 29 H 1.09005 * 109.46943 * 330.00126 * 7 6 5 30 30 H 1.09003 * 109.47219 * 300.00172 * 9 8 7 31 31 H 1.08998 * 109.46888 * 60.00019 * 9 8 7 32 32 H 1.09000 * 109.47578 * 300.00581 * 10 9 8 33 33 H 1.08998 * 109.47275 * 60.00086 * 10 9 8 34 34 H 0.96994 * 120.00159 * 179.97438 * 14 13 11 35 35 H 1.08002 * 126.03942 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7773 -1.7639 1.2225 6 6 3.1328 -2.2572 2.3916 7 6 4.0002 -3.4817 2.5302 8 16 5.7443 -2.9850 2.5781 9 6 6.6149 -4.5677 2.7439 10 6 8.1231 -4.3167 2.7998 11 6 8.8465 -5.6315 2.9383 12 1 8.2864 -6.5539 2.9816 13 6 10.2232 -5.6569 3.0086 14 7 10.9052 -4.5336 2.9553 15 14 11.1197 -7.2866 3.1809 16 1 10.1310 -8.3940 3.2181 17 1 12.0304 -7.4754 2.0232 18 1 11.9105 -7.2862 4.4378 19 6 2.6620 -1.5819 3.4443 20 16 1.7039 -0.2328 2.8389 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4426 -0.0005 28 1 3.7460 -4.0047 3.4520 29 1 3.8340 -4.1428 1.6796 30 1 6.2953 -5.0639 3.6603 31 1 6.3832 -5.2013 1.8879 32 1 8.4431 -3.8202 1.8838 33 1 8.3546 -3.6833 3.6561 34 1 11.8737 -4.5515 3.0051 35 1 2.8369 -1.8215 4.4828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190913659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:28 Heat of formation + Delta-G solvation = -3.151323 kcal Electronic energy + Delta-G solvation = -15373.816114 eV Core-core repulsion = 12816.192378 eV Total energy + Delta-G solvation = -2557.623735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98343 -36.68669 -35.79312 -32.92753 -32.47576 -28.88217 -28.08734 -27.32078 -25.84865 -23.24734 -21.81157 -20.84977 -18.69886 -18.60432 -17.21170 -16.73487 -16.52804 -15.98825 -15.69447 -15.37038 -15.02148 -14.85237 -14.22190 -14.18025 -13.97166 -13.71689 -13.44837 -13.03883 -12.95853 -12.62366 -12.57039 -12.36188 -12.18986 -12.16416 -11.88995 -11.70792 -11.37573 -10.89059 -10.64508 -10.62797 -10.40938 -9.66066 -8.68238 -8.24346 -6.38262 -0.37182 0.36616 0.57901 0.72122 1.40319 1.41153 1.54600 1.64141 2.02640 2.39749 2.92569 3.08868 3.68478 3.92750 3.98254 4.13273 4.21020 4.24553 4.36066 4.39057 4.50545 4.60375 4.74160 4.84766 4.88860 4.91434 4.98808 5.14092 5.28581 5.31605 5.36419 5.47200 5.72349 6.09201 6.74568 6.76267 7.31411 8.87820 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044816 B = 0.003004 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.626349 B = 9318.747442 C = 9474.295474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.046 3.954 5 N -0.500 5.500 6 C 0.065 3.935 7 C -0.001 4.001 8 S -0.305 6.305 9 C -0.048 4.048 10 C 0.045 3.955 11 C -0.541 4.541 12 H 0.069 0.931 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.974 3.026 16 H -0.258 1.258 17 H -0.278 1.278 18 H -0.276 1.276 19 C -0.249 4.249 20 S 0.177 5.823 21 H 0.067 0.933 22 H 0.090 0.910 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.075 0.925 32 H -0.007 1.007 33 H -0.003 1.003 34 H 0.266 0.734 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 10.038 -2.078 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.203 4.203 4 C -0.233 4.233 5 N -0.214 5.214 6 C -0.067 4.067 7 C -0.151 4.151 8 S -0.076 6.076 9 C -0.196 4.196 10 C 0.007 3.993 11 C -0.580 4.580 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.572 5.572 15 Si 0.798 3.202 16 H -0.182 1.182 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.391 4.391 20 S 0.432 5.568 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -24.313 11.696 -2.178 27.067 hybrid contribution 1.185 -2.674 0.223 2.933 sum -23.128 9.022 -1.955 24.902 Atomic orbital electron populations 1.21909 0.91270 1.02656 1.04073 1.20005 0.97489 0.95749 0.91400 1.21935 1.00964 0.93272 1.04130 1.27640 0.99050 0.95702 1.00904 1.66036 1.14030 1.12251 1.29126 1.19404 1.00585 0.99273 0.87467 1.21709 0.90795 0.96014 1.06600 1.87217 1.03911 1.19097 1.97420 1.23359 0.98640 0.93603 1.04005 1.18671 0.88650 0.96536 0.95485 1.21575 0.92203 0.93309 1.50959 0.91325 1.26056 0.98663 1.00703 0.94429 1.70129 1.07520 1.28654 1.50927 0.85267 0.78354 0.78774 0.77841 1.18193 1.20364 1.20199 1.27177 1.06124 1.00643 1.05180 1.83476 1.46691 1.26765 0.99855 0.91405 0.89116 0.92748 0.89024 0.88937 0.91378 0.93595 0.86563 0.88871 0.89904 0.90660 0.98850 0.98436 0.92548 0.78575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.09 71.98 0.65 -0.92 16 2 C -0.02 -0.40 3.35 -11.54 -0.04 -0.44 16 3 C -0.14 -1.95 9.09 71.98 0.65 -1.29 16 4 C 0.05 1.04 6.03 88.52 0.53 1.57 16 5 N -0.50 -14.87 10.53 -179.42 -1.89 -16.76 16 6 C 0.06 1.86 6.00 41.52 0.25 2.10 16 7 C 0.00 -0.03 6.36 71.23 0.45 0.42 16 8 S -0.30 -12.13 21.72 -56.49 -1.23 -13.35 16 9 C -0.05 -2.09 5.88 71.98 0.42 -1.67 16 10 C 0.04 2.48 4.98 29.85 0.15 2.63 16 11 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 12 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 13 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 14 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 15 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 16 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 C -0.25 -5.78 11.13 66.78 0.74 -5.04 16 20 S 0.18 3.28 22.53 -56.49 -1.27 2.00 16 21 H 0.07 0.64 7.94 -2.38 -0.02 0.63 16 22 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.79 7.92 -2.38 -0.02 0.77 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.12 2.89 8.12 -2.39 -0.02 2.87 16 29 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.20 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -70.01 324.92 3.49 -66.52 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.05 Total: 5.79 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 4.52 Total: -33.02 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.60 Total: -74.27 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -2.50 Total: -11.35 kcal Total: -70.01 3.49 -66.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190913659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.367 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds