Wall clock time and date at job start Mon Mar 30 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99752 * 2 1 4 4 H 1.48502 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99801 * 3 2 1 6 6 H 1.48503 * 109.47521 * 60.00454 * 3 2 1 7 7 C 1.37878 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47235 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.47132 * 180.02562 * 10 9 7 12 12 C 1.34723 * 116.99944 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.47787 * 120.00367 * 179.97438 * 12 11 10 15 15 C 1.38949 * 121.11446 * 354.20609 * 14 12 11 16 16 C 1.39270 * 119.56941 * 179.76510 * 15 14 12 17 17 N 1.30987 * 121.88661 * 0.50697 * 16 15 14 18 18 C 1.33524 * 121.84529 * 359.75345 * 17 16 15 19 19 C 1.40719 * 120.97443 * 179.97438 * 18 17 16 20 20 C 1.36059 * 119.74340 * 180.02562 * 19 18 17 21 21 C 1.39347 * 121.05444 * 0.02562 * 20 19 18 22 22 C 1.36253 * 120.83737 * 359.97438 * 21 20 19 23 23 C 1.40082 * 119.64517 * 359.97438 * 22 21 20 24 24 H 0.97006 * 119.99722 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47213 * 60.00135 * 9 7 2 26 26 H 1.08998 * 109.47105 * 300.00563 * 9 7 2 27 27 H 1.08995 * 109.47191 * 59.99555 * 10 9 7 28 28 H 1.09006 * 109.46563 * 300.00215 * 10 9 7 29 29 H 1.08000 * 120.21448 * 0.02562 * 15 14 12 30 30 H 1.07993 * 119.05595 * 180.26008 * 16 15 14 31 31 H 1.08006 * 120.12678 * 0.02562 * 19 18 17 32 32 H 1.08005 * 119.47397 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.58274 * 179.97438 * 21 20 19 34 34 H 1.08006 * 120.17765 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2530 -6.0494 -0.0018 13 8 3.4661 -5.9858 -0.0013 14 6 1.5822 -7.3662 -0.0018 15 6 0.2017 -7.4687 0.1188 16 6 -0.3974 -8.7259 0.1100 17 7 0.3047 -9.8263 0.0004 18 6 1.6349 -9.8048 -0.1140 19 6 2.3712 -10.9983 -0.2302 20 6 3.7260 -10.9472 -0.3449 21 6 4.4016 -9.7285 -0.3490 22 6 3.7219 -8.5528 -0.2385 23 6 2.3262 -8.5678 -0.1197 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 -0.4031 -6.5791 0.2146 30 1 -1.4713 -8.7958 0.2000 31 1 1.8628 -11.9513 -0.2283 32 1 4.2867 -11.8660 -0.4342 33 1 5.4776 -9.7157 -0.4409 34 1 4.2563 -7.6142 -0.2433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194487050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:50 Heat of formation + Delta-G solvation = -34.409935 kcal Electronic energy + Delta-G solvation = -19194.487081 eV Core-core repulsion = 16057.311048 eV Total energy + Delta-G solvation = -3137.176033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23159 -39.70750 -37.27851 -36.34259 -33.69453 -33.35934 -30.76978 -30.59516 -29.98364 -25.95911 -24.68359 -23.73938 -23.03496 -21.18879 -20.80014 -18.47353 -17.76423 -17.28183 -16.73142 -16.13660 -16.00983 -15.51233 -14.81050 -14.60291 -14.55359 -14.10178 -14.04319 -13.39376 -13.28010 -12.81457 -12.41255 -11.97573 -11.86169 -11.55602 -11.37625 -11.13023 -10.86513 -10.76140 -10.64945 -10.52643 -9.82858 -9.77087 -9.50363 -9.33537 -8.98656 -8.50384 -8.46086 -6.15934 -4.20562 -0.11923 0.61133 1.50648 2.56792 2.83282 2.93284 3.24286 3.32033 3.36618 3.94312 4.04737 4.33299 4.43868 4.54242 4.65031 4.70568 4.95042 5.05545 5.19406 5.21046 5.37811 5.48021 5.65350 5.85014 5.87913 5.98392 5.99048 6.12923 6.30810 6.33329 6.52874 6.63004 6.87222 7.47500 7.53961 7.63136 7.78654 7.98504 8.16827 8.85003 9.44337 10.95541 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.003480 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.239043 B = 8043.418422 C = 8767.556902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.346 6.346 12 C 0.505 3.495 13 O -0.503 6.503 14 C -0.060 4.060 15 C -0.108 4.108 16 C 0.122 3.878 17 N -0.456 5.456 18 C 0.120 3.880 19 C -0.096 4.096 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.105 4.105 23 C -0.063 4.063 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -20.334 -0.265 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.262 6.262 12 C 0.349 3.651 13 O -0.393 6.393 14 C -0.070 4.070 15 C -0.128 4.128 16 C -0.050 4.050 17 N -0.165 5.165 18 C -0.002 4.002 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.123 4.123 23 C -0.065 4.065 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.651 -20.991 -0.275 21.160 hybrid contribution 0.867 1.828 0.011 2.024 sum 3.519 -19.163 -0.264 19.485 Atomic orbital electron populations 1.69980 1.06100 1.26971 1.49696 1.24984 0.94929 0.99435 0.94783 0.86408 0.80051 0.83074 0.77743 1.19568 1.20798 1.20793 1.20994 0.93235 0.90004 1.52310 0.92149 1.19193 0.94182 0.88907 0.99000 1.23773 0.96549 0.78098 1.01290 1.86584 1.41888 1.15542 1.82186 1.20884 0.85549 0.85289 0.73341 1.90622 1.14937 1.87607 1.46144 1.19611 0.94073 0.90645 1.02651 1.22764 0.94156 1.00676 0.95226 1.23019 1.00763 0.86906 0.94284 1.67782 1.06692 1.31892 1.10100 1.18841 0.89446 0.92392 0.99510 1.20774 0.93633 0.96683 1.00327 1.20985 0.94205 0.98425 0.98508 1.21104 1.00631 0.92165 0.99462 1.22074 0.92788 1.01281 0.96191 1.18670 0.95129 0.92045 1.00675 0.92700 0.95231 0.95241 0.91933 0.91950 0.82304 0.81308 0.84550 0.85228 0.85291 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.08 1.61 5.41 37.16 0.20 1.81 16 11 O -0.35 -6.65 9.58 -40.56 -0.39 -7.04 16 12 C 0.50 8.86 7.88 34.64 0.27 9.13 16 13 O -0.50 -9.45 13.31 -19.24 -0.26 -9.70 16 14 C -0.06 -0.90 5.93 -104.36 -0.62 -1.52 16 15 C -0.11 -1.33 9.69 -38.93 -0.38 -1.71 16 16 C 0.12 1.33 11.14 -17.53 -0.20 1.14 16 17 N -0.46 -5.80 10.30 -11.01 -0.11 -5.91 16 18 C 0.12 1.58 6.61 -84.87 -0.56 1.02 16 19 C -0.10 -1.02 9.98 -39.43 -0.39 -1.41 16 20 C -0.10 -0.94 9.94 -39.95 -0.40 -1.33 16 21 C -0.12 -1.21 9.96 -39.88 -0.40 -1.61 16 22 C -0.11 -1.42 9.25 -39.60 -0.37 -1.78 16 23 C -0.06 -0.90 5.76 -106.51 -0.61 -1.52 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.16 1.76 7.70 -52.49 -0.40 1.36 16 30 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.17 2.47 4.98 -52.48 -0.26 2.21 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -31.07 302.35 -8.08 -39.16 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.59 Total: -1.43 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -4.01 Total: -10.55 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.62 Total: -31.03 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.64 Total: -16.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.07 -8.08 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194487050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.746 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds