Wall clock time and date at job start Mon Mar 30 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99752 * 2 1 4 4 H 1.48502 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99801 * 3 2 1 6 6 H 1.48503 * 109.47521 * 60.00454 * 3 2 1 7 7 C 1.37878 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47235 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.47132 * 180.02562 * 10 9 7 12 12 C 1.34723 * 116.99944 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.47787 * 120.00367 * 179.97438 * 12 11 10 15 15 C 1.38949 * 121.11446 * 354.20609 * 14 12 11 16 16 C 1.39270 * 119.56941 * 179.76510 * 15 14 12 17 17 N 1.30987 * 121.88661 * 0.50697 * 16 15 14 18 18 C 1.33524 * 121.84529 * 359.75345 * 17 16 15 19 19 C 1.40719 * 120.97443 * 179.97438 * 18 17 16 20 20 C 1.36059 * 119.74340 * 180.02562 * 19 18 17 21 21 C 1.39347 * 121.05444 * 0.02562 * 20 19 18 22 22 C 1.36253 * 120.83737 * 359.97438 * 21 20 19 23 23 C 1.40082 * 119.64517 * 359.97438 * 22 21 20 24 24 H 0.97006 * 119.99722 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47213 * 60.00135 * 9 7 2 26 26 H 1.08998 * 109.47105 * 300.00563 * 9 7 2 27 27 H 1.08995 * 109.47191 * 59.99555 * 10 9 7 28 28 H 1.09006 * 109.46563 * 300.00215 * 10 9 7 29 29 H 1.08000 * 120.21448 * 0.02562 * 15 14 12 30 30 H 1.07993 * 119.05595 * 180.26008 * 16 15 14 31 31 H 1.08006 * 120.12678 * 0.02562 * 19 18 17 32 32 H 1.08005 * 119.47397 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.58274 * 179.97438 * 21 20 19 34 34 H 1.08006 * 120.17765 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2530 -6.0494 -0.0018 13 8 3.4661 -5.9858 -0.0013 14 6 1.5822 -7.3662 -0.0018 15 6 0.2017 -7.4687 0.1188 16 6 -0.3974 -8.7259 0.1100 17 7 0.3047 -9.8263 0.0004 18 6 1.6349 -9.8048 -0.1140 19 6 2.3712 -10.9983 -0.2302 20 6 3.7260 -10.9472 -0.3449 21 6 4.4016 -9.7285 -0.3490 22 6 3.7219 -8.5528 -0.2385 23 6 2.3262 -8.5678 -0.1197 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 -0.4031 -6.5791 0.2146 30 1 -1.4713 -8.7958 0.2000 31 1 1.8628 -11.9513 -0.2283 32 1 4.2867 -11.8660 -0.4342 33 1 5.4776 -9.7157 -0.4409 34 1 4.2563 -7.6142 -0.2433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194487050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:50 Heat of formation + Delta-G solvation = -51.667172 kcal Electronic energy + Delta-G solvation = -19195.235411 eV Core-core repulsion = 16057.311048 eV Total energy + Delta-G solvation = -3137.924363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.29865 -41.03361 -38.20298 -37.81100 -35.48896 -34.65577 -32.40204 -31.63014 -31.09403 -27.53890 -26.16886 -24.64567 -24.14918 -22.92696 -22.16246 -19.58833 -18.88347 -18.44021 -18.29633 -17.70996 -17.58855 -16.66131 -16.41480 -15.66400 -15.64411 -15.25139 -14.97721 -14.91850 -14.44899 -14.24962 -14.13849 -13.22902 -13.08318 -12.83922 -12.77699 -12.66350 -12.55672 -12.39965 -11.90247 -11.69631 -11.64380 -11.54823 -11.42899 -10.63027 -10.58346 -9.86514 -9.38375 -8.28607 -6.41559 -1.12985 -0.28600 0.50067 1.37564 1.41159 1.42246 1.46411 1.56241 1.94788 2.38517 3.00649 3.06270 3.20456 3.36100 3.57122 3.60711 3.79036 4.14000 4.16443 4.18007 4.19056 4.37646 4.47817 4.52277 4.65242 4.75052 4.97217 5.02352 5.21484 5.29961 5.38741 5.42745 5.44246 5.56198 5.71526 5.84003 6.04262 6.50877 6.70067 6.72062 7.28344 8.84098 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.003480 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.239043 B = 8043.418422 C = 8767.556902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.352 6.352 12 C 0.504 3.496 13 O -0.520 6.520 14 C -0.091 4.091 15 C -0.097 4.097 16 C 0.125 3.875 17 N -0.460 5.460 18 C 0.100 3.900 19 C -0.097 4.097 20 C -0.093 4.093 21 C -0.101 4.101 22 C -0.140 4.140 23 C -0.079 4.079 24 H 0.268 0.732 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.168 0.832 30 H 0.210 0.790 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -22.022 -0.322 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.268 6.268 12 C 0.350 3.650 13 O -0.411 6.411 14 C -0.100 4.100 15 C -0.117 4.117 16 C -0.047 4.047 17 N -0.169 5.169 18 C -0.021 4.021 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.159 4.159 23 C -0.081 4.081 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.185 0.815 30 H 0.226 0.774 31 H 0.177 0.823 32 H 0.188 0.812 33 H 0.173 0.827 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.270 -22.704 -0.332 22.940 hybrid contribution 0.667 2.197 0.024 2.296 sum 3.937 -20.507 -0.309 20.884 Atomic orbital electron populations 1.70094 1.07753 1.28237 1.50366 1.25940 0.95841 1.03343 0.94075 0.85283 0.78915 0.78150 0.78005 1.18648 1.20098 1.20072 1.21389 0.93729 0.91171 1.52493 0.91675 1.18993 0.94324 0.90340 0.96953 1.23292 0.95244 0.78294 1.01391 1.86553 1.41918 1.15452 1.82852 1.21403 0.85523 0.85531 0.72493 1.90620 1.15679 1.87820 1.46991 1.19557 0.95249 0.89261 1.05908 1.22996 0.93186 1.01942 0.93604 1.23606 1.02380 0.85686 0.93051 1.67864 1.06615 1.32442 1.09970 1.19212 0.89894 0.92782 1.00252 1.21150 0.94316 0.96634 0.99419 1.21410 0.93927 0.99314 0.96569 1.21474 1.01971 0.91648 0.96733 1.21969 0.92799 1.01733 0.99354 1.18832 0.95648 0.92260 1.01361 0.92307 0.97280 0.97213 0.91773 0.91832 0.81458 0.77355 0.82299 0.81151 0.82725 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.19 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.55 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.64 5.35 29.85 0.16 1.80 16 10 C 0.09 4.01 5.41 71.98 0.39 4.40 16 11 O -0.35 -14.03 9.58 -56.33 -0.54 -14.56 16 12 C 0.50 18.45 7.88 70.35 0.55 19.01 16 13 O -0.52 -20.47 13.31 19.93 0.27 -20.20 16 14 C -0.09 -2.77 5.93 -19.69 -0.12 -2.89 16 15 C -0.10 -2.37 9.69 22.69 0.22 -2.15 16 16 C 0.12 2.50 11.14 85.07 0.95 3.45 16 17 N -0.46 -10.91 10.30 -188.74 -1.94 -12.85 16 18 C 0.10 2.51 6.61 40.35 0.27 2.77 16 19 C -0.10 -1.81 9.98 22.37 0.22 -1.58 16 20 C -0.09 -1.41 9.94 22.03 0.22 -1.19 16 21 C -0.10 -1.92 9.96 22.07 0.22 -1.70 16 22 C -0.14 -3.81 9.25 22.25 0.21 -3.61 16 23 C -0.08 -2.27 5.76 -21.09 -0.12 -2.39 16 24 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 25 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.17 3.68 7.70 -2.91 -0.02 3.66 16 30 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.15 4.54 4.98 -2.91 -0.01 4.52 16 Total: -1.00 -68.58 302.35 5.08 -63.51 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.12 Total: 7.04 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 3.86 Total: -13.75 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.66 Total: -67.22 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.27 Total: -34.76 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.58 5.08 -63.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194487050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.842 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds