Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00122 * 2 1 4 4 H 1.48498 * 109.46948 * 269.99792 * 3 2 1 5 5 H 1.48499 * 109.47088 * 29.99983 * 3 2 1 6 6 H 1.48503 * 109.46963 * 149.99899 * 3 2 1 7 7 C 1.37881 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46741 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.34727 * 116.99759 * 180.02562 * 11 10 9 13 13 O 1.21474 * 120.00322 * 0.02562 * 12 11 10 14 14 C 1.47649 * 119.99897 * 180.02562 * 12 11 10 15 15 C 1.40682 * 119.80649 * 0.02562 * 14 12 11 16 16 C 1.35690 * 120.91039 * 180.02562 * 15 14 12 17 17 C 1.40765 * 120.12192 * 0.23961 * 16 15 14 18 18 N 1.33645 * 120.81995 * 180.31146 * 17 16 15 19 19 C 1.31118 * 121.39884 * 179.74674 * 18 17 16 20 20 C 1.39317 * 121.77045 * 359.70082 * 19 18 17 21 21 C 1.36585 * 119.90317 * 0.02562 * 20 19 18 22 22 C 1.40898 * 118.15905 * 359.97438 * 21 20 19 23 23 C 1.38608 * 119.81342 * 180.02562 * 14 12 11 24 24 H 0.96994 * 119.99587 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46393 * 60.00523 * 9 7 2 26 26 H 1.08997 * 109.47068 * 300.00463 * 9 7 2 27 27 H 1.09002 * 109.46800 * 60.00752 * 10 9 7 28 28 H 1.08998 * 109.47277 * 300.00363 * 10 9 7 29 29 H 1.07991 * 119.54719 * 0.02701 * 15 14 12 30 30 H 1.08002 * 119.93461 * 179.97438 * 16 15 14 31 31 H 1.08003 * 119.11793 * 179.72686 * 19 18 17 32 32 H 1.08000 * 120.05025 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.91784 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.29953 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 8 1.5192 -4.9196 -0.0024 12 6 2.2530 -6.0495 -0.0031 13 8 3.4661 -5.9859 -0.0026 14 6 1.5827 -7.3650 -0.0043 15 6 0.1775 -7.4339 -0.0053 16 6 -0.4617 -8.6308 -0.0059 17 6 0.2795 -9.8275 -0.0004 18 7 -0.3356 -11.0139 -0.0072 19 6 0.3436 -12.1355 -0.0071 20 6 1.7367 -12.1495 -0.0062 21 6 2.4294 -10.9724 -0.0048 22 6 1.6961 -9.7693 -0.0049 23 6 2.3413 -8.5250 -0.0044 24 1 -0.4849 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 -0.4004 -6.5216 -0.0057 30 1 -1.5411 -8.6653 -0.0063 31 1 -0.1913 -13.0738 -0.0082 32 1 2.2681 -13.0897 -0.0057 33 1 3.5094 -10.9641 -0.0036 34 1 3.4200 -8.4706 -0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195350028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = -42.528596 kcal Electronic energy + Delta-G solvation = -18826.266648 eV Core-core repulsion = 15688.738564 eV Total energy + Delta-G solvation = -3137.528084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12995 -39.87165 -37.16965 -36.07077 -33.80520 -33.36724 -31.23416 -30.36557 -30.09179 -25.86544 -24.56237 -24.06125 -22.49238 -21.48711 -20.78006 -18.63489 -17.85573 -17.21400 -16.62538 -15.98634 -15.95156 -15.69474 -14.76689 -14.63891 -14.54177 -14.24066 -13.67818 -13.38933 -13.37848 -13.07317 -12.37651 -12.21505 -11.90220 -11.67442 -11.25924 -11.07268 -10.89640 -10.78462 -10.73342 -10.35985 -9.81888 -9.69287 -9.66653 -9.32490 -9.09031 -8.56378 -8.45871 -6.12090 -4.16527 -0.07497 0.41481 1.61454 2.19682 3.02340 3.11778 3.27708 3.33941 3.38104 3.85700 3.98363 4.27948 4.37303 4.39150 4.53909 4.70531 4.78573 4.93347 5.08137 5.18624 5.24656 5.47674 5.61942 5.67995 5.78531 6.00903 6.05813 6.07705 6.11134 6.19783 6.50459 6.60051 6.87606 7.52843 7.57866 7.59783 7.83994 8.10171 8.22118 8.88944 9.47996 10.99449 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.002997 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.660370 B = 9339.183895 C = 9852.396481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.500 3.500 13 O -0.513 6.513 14 C -0.111 4.111 15 C -0.053 4.053 16 C -0.105 4.105 17 C 0.147 3.853 18 N -0.478 5.478 19 C 0.140 3.860 20 C -0.185 4.185 21 C -0.043 4.043 22 C -0.119 4.119 23 C -0.025 4.025 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -24.026 -0.006 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.266 6.266 12 C 0.345 3.655 13 O -0.404 6.404 14 C -0.112 4.112 15 C -0.073 4.073 16 C -0.124 4.124 17 C 0.026 3.974 18 N -0.186 5.186 19 C -0.032 4.032 20 C -0.205 4.205 21 C -0.069 4.069 22 C -0.121 4.121 23 C -0.044 4.044 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.748 -23.716 -0.005 23.728 hybrid contribution 1.524 0.953 -0.005 1.797 sum 2.272 -22.763 -0.010 22.876 Atomic orbital electron populations 1.69971 1.06093 1.27030 1.49719 1.24983 0.94921 0.99399 0.94838 0.86467 0.79764 0.82799 0.78256 1.20464 1.21034 1.19719 1.20971 0.93187 0.90079 1.52276 0.92237 1.19181 0.94187 0.88943 0.98956 1.23711 0.96465 0.78384 1.01123 1.86574 1.41908 1.15594 1.82480 1.21014 0.85627 0.85563 0.73315 1.90798 1.15000 1.88368 1.46233 1.19323 0.94136 0.90910 1.06817 1.21243 0.93025 0.99184 0.93809 1.20749 1.00814 0.89582 1.01230 1.19077 0.89719 0.92582 0.95999 1.68095 1.39947 0.97742 1.12850 1.23059 0.91610 0.96610 0.91960 1.21894 0.95846 0.99293 1.03430 1.21567 1.00639 0.91253 0.93416 1.18747 0.94326 0.94252 1.04749 1.21461 1.00681 0.89627 0.92662 0.92677 0.95273 0.95259 0.92119 0.92126 0.83107 0.83843 0.82231 0.84286 0.83990 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.67 5.41 37.16 0.20 1.87 16 11 O -0.35 -6.93 9.43 -40.57 -0.38 -7.31 16 12 C 0.50 8.94 7.89 34.57 0.27 9.21 16 13 O -0.51 -10.14 16.10 -19.25 -0.31 -10.45 16 14 C -0.11 -1.59 5.87 -105.00 -0.62 -2.20 16 15 C -0.05 -0.68 9.51 -39.57 -0.38 -1.05 16 16 C -0.11 -1.24 9.95 -39.54 -0.39 -1.63 16 17 C 0.15 1.79 6.61 -84.77 -0.56 1.23 16 18 N -0.48 -5.43 10.33 -10.91 -0.11 -5.54 16 19 C 0.14 1.13 11.15 -17.46 -0.19 0.94 16 20 C -0.18 -1.26 10.03 -39.78 -0.40 -1.66 16 21 C -0.04 -0.35 9.89 -39.17 -0.39 -0.74 16 22 C -0.12 -1.33 5.74 -106.82 -0.61 -1.94 16 23 C -0.03 -0.31 9.35 -38.72 -0.36 -0.67 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.15 1.88 7.57 -52.49 -0.40 1.48 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.16 0.76 8.06 -52.48 -0.42 0.33 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.15 1.64 7.62 -52.49 -0.40 1.24 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -32.39 307.34 -8.17 -40.55 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.72 Total: -3.08 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.99 Total: -9.61 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.62 Total: -31.05 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.69 Total: -17.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.39 -8.17 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195350028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.976 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds