Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00122 * 2 1 4 4 H 1.48498 * 109.46948 * 269.99792 * 3 2 1 5 5 H 1.48499 * 109.47088 * 29.99983 * 3 2 1 6 6 H 1.48503 * 109.46963 * 149.99899 * 3 2 1 7 7 C 1.37881 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46741 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.34727 * 116.99759 * 180.02562 * 11 10 9 13 13 O 1.21474 * 120.00322 * 0.02562 * 12 11 10 14 14 C 1.47649 * 119.99897 * 180.02562 * 12 11 10 15 15 C 1.40682 * 119.80649 * 0.02562 * 14 12 11 16 16 C 1.35690 * 120.91039 * 180.02562 * 15 14 12 17 17 C 1.40765 * 120.12192 * 0.23961 * 16 15 14 18 18 N 1.33645 * 120.81995 * 180.31146 * 17 16 15 19 19 C 1.31118 * 121.39884 * 179.74674 * 18 17 16 20 20 C 1.39317 * 121.77045 * 359.70082 * 19 18 17 21 21 C 1.36585 * 119.90317 * 0.02562 * 20 19 18 22 22 C 1.40898 * 118.15905 * 359.97438 * 21 20 19 23 23 C 1.38608 * 119.81342 * 180.02562 * 14 12 11 24 24 H 0.96994 * 119.99587 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46393 * 60.00523 * 9 7 2 26 26 H 1.08997 * 109.47068 * 300.00463 * 9 7 2 27 27 H 1.09002 * 109.46800 * 60.00752 * 10 9 7 28 28 H 1.08998 * 109.47277 * 300.00363 * 10 9 7 29 29 H 1.07991 * 119.54719 * 0.02701 * 15 14 12 30 30 H 1.08002 * 119.93461 * 179.97438 * 16 15 14 31 31 H 1.08003 * 119.11793 * 179.72686 * 19 18 17 32 32 H 1.08000 * 120.05025 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.91784 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.29953 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 8 1.5192 -4.9196 -0.0024 12 6 2.2530 -6.0495 -0.0031 13 8 3.4661 -5.9859 -0.0026 14 6 1.5827 -7.3650 -0.0043 15 6 0.1775 -7.4339 -0.0053 16 6 -0.4617 -8.6308 -0.0059 17 6 0.2795 -9.8275 -0.0004 18 7 -0.3356 -11.0139 -0.0072 19 6 0.3436 -12.1355 -0.0071 20 6 1.7367 -12.1495 -0.0062 21 6 2.4294 -10.9724 -0.0048 22 6 1.6961 -9.7693 -0.0049 23 6 2.3413 -8.5250 -0.0044 24 1 -0.4849 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 -0.4004 -6.5216 -0.0057 30 1 -1.5411 -8.6653 -0.0063 31 1 -0.1913 -13.0738 -0.0082 32 1 2.2681 -13.0897 -0.0057 33 1 3.5094 -10.9641 -0.0036 34 1 3.4200 -8.4706 -0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195350028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = -60.978373 kcal Electronic energy + Delta-G solvation = -18827.066690 eV Core-core repulsion = 15688.738564 eV Total energy + Delta-G solvation = -3138.328127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.04238 -41.21881 -38.21375 -37.52466 -35.46323 -34.56317 -32.59135 -31.69509 -31.17912 -27.44169 -25.97119 -24.88473 -23.49353 -22.97727 -22.35357 -19.79012 -18.86529 -18.49551 -18.13469 -17.57616 -17.37840 -16.75867 -16.42092 -15.59830 -15.52508 -15.06844 -15.04884 -14.81530 -14.37983 -14.34102 -14.01253 -13.26918 -13.24073 -12.97343 -12.79497 -12.61816 -12.58717 -12.50890 -11.95418 -11.64286 -11.57370 -11.51669 -11.40317 -10.62115 -10.53763 -9.93478 -9.42804 -8.27887 -6.41162 -0.94777 -0.40020 0.75393 1.17224 1.40285 1.42746 1.52869 1.62660 2.05143 2.39370 3.02017 3.06685 3.24674 3.48409 3.52104 3.70427 3.90319 3.94445 3.99591 4.20367 4.20641 4.34346 4.48049 4.65184 4.71424 4.80519 4.89106 5.02686 5.14390 5.17897 5.26190 5.43388 5.45198 5.47148 5.71192 5.72159 6.05122 6.60180 6.72622 6.85749 7.28636 8.84850 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.002997 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.660370 B = 9339.183895 C = 9852.396481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.357 6.357 12 C 0.502 3.498 13 O -0.537 6.537 14 C -0.139 4.139 15 C -0.062 4.062 16 C -0.106 4.106 17 C 0.134 3.866 18 N -0.511 5.511 19 C 0.146 3.854 20 C -0.170 4.170 21 C -0.046 4.046 22 C -0.134 4.134 23 C -0.010 4.010 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.196 0.804 32 H 0.182 0.818 33 H 0.171 0.829 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -26.432 -0.015 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.273 6.273 12 C 0.349 3.651 13 O -0.429 6.429 14 C -0.140 4.140 15 C -0.082 4.082 16 C -0.125 4.125 17 C 0.013 3.987 18 N -0.220 5.220 19 C -0.026 4.026 20 C -0.190 4.190 21 C -0.071 4.071 22 C -0.136 4.136 23 C -0.029 4.029 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.162 0.838 30 H 0.172 0.828 31 H 0.213 0.787 32 H 0.199 0.801 33 H 0.188 0.812 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.031 -26.148 -0.015 26.227 hybrid contribution 1.087 1.374 -0.003 1.752 sum 3.118 -24.774 -0.018 24.970 Atomic orbital electron populations 1.70095 1.07831 1.28308 1.50373 1.25972 0.95847 1.03436 0.94058 0.85314 0.78535 0.77714 0.78690 1.19513 1.20385 1.18700 1.21373 0.93735 0.91175 1.52530 0.91618 1.18987 0.94340 0.90507 0.96794 1.23240 0.95157 0.78618 1.01240 1.86559 1.42065 1.15628 1.83098 1.21605 0.85494 0.85856 0.72156 1.90768 1.15842 1.88578 1.47682 1.19158 0.94745 0.89415 1.10659 1.21141 0.92520 0.99543 0.95009 1.20865 1.01422 0.89380 1.00796 1.19259 0.90326 0.93074 0.96056 1.68145 1.40851 0.98226 1.14743 1.23836 0.92796 0.96869 0.89094 1.22371 0.95367 1.00491 1.00724 1.21969 1.02153 0.90420 0.92592 1.18939 0.94318 0.94925 1.05426 1.21611 1.01004 0.89437 0.90807 0.92310 0.97424 0.97410 0.91945 0.91931 0.83769 0.82755 0.78722 0.80085 0.81163 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.68 5.35 29.85 0.16 1.84 16 10 C 0.09 4.14 5.41 71.98 0.39 4.53 16 11 O -0.36 -14.86 9.43 -56.37 -0.53 -15.40 16 12 C 0.50 18.61 7.89 70.31 0.55 19.16 16 13 O -0.54 -21.64 16.10 19.92 0.32 -21.32 16 14 C -0.14 -4.10 5.87 -20.11 -0.12 -4.22 16 15 C -0.06 -1.68 9.51 22.28 0.21 -1.47 16 16 C -0.11 -2.55 9.95 22.30 0.22 -2.33 16 17 C 0.13 3.12 6.61 40.36 0.27 3.39 16 18 N -0.51 -10.60 10.33 -188.43 -1.95 -12.54 16 19 C 0.15 1.81 11.15 85.06 0.95 2.76 16 20 C -0.17 -1.53 10.03 22.14 0.22 -1.30 16 21 C -0.05 -0.59 9.89 22.53 0.22 -0.37 16 22 C -0.13 -2.80 5.74 -21.29 -0.12 -2.92 16 23 C -0.01 -0.24 9.35 22.83 0.21 -0.02 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.14 3.93 7.57 -2.92 -0.02 3.91 16 30 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 33 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.16 3.34 7.62 -2.91 -0.02 3.32 16 Total: -1.00 -71.72 307.34 5.13 -66.59 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.11 Total: 3.70 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 3.87 Total: -11.32 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.66 Total: -68.07 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.21 Total: -36.72 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.72 5.13 -66.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195350028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.614 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds