Wall clock time and date at job start Mon Mar 30 2020 01:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00285 * 2 1 4 4 C 1.53006 * 109.47242 * 66.04395 * 3 2 1 5 5 C 1.50703 * 109.47232 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99547 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00265 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46809 * 60.00090 * 9 7 5 11 11 H 1.48500 * 109.47582 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47340 * 300.00782 * 9 7 5 13 13 C 1.46894 * 111.00068 * 236.04280 * 2 1 3 14 14 C 1.50698 * 109.47175 * 293.95825 * 13 2 1 15 15 C 1.38264 * 119.97083 * 270.01653 * 14 13 2 16 16 C 1.38194 * 120.05301 * 180.02562 * 15 14 13 17 17 C 1.38447 * 119.98582 * 359.95563 * 16 15 14 18 18 F 1.35098 * 120.03314 * 180.29640 * 17 16 15 19 19 C 1.38555 * 119.93778 * 0.02622 * 17 16 15 20 20 Cl 1.73602 * 120.02332 * 180.02562 * 19 17 16 21 21 C 1.38218 * 119.96823 * 90.00112 * 14 13 2 22 22 H 1.08998 * 109.47428 * 183.95665 * 1 2 3 23 23 H 1.09000 * 109.46986 * 303.95501 * 1 2 3 24 24 H 1.09003 * 109.46957 * 63.95186 * 1 2 3 25 25 H 1.09001 * 109.47327 * 186.04058 * 3 2 1 26 26 H 1.08998 * 109.47394 * 306.04527 * 3 2 1 27 27 H 1.08994 * 109.47509 * 300.00267 * 4 3 2 28 28 H 1.08998 * 109.47000 * 60.00302 * 4 3 2 29 29 H 0.97000 * 119.99966 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47515 * 173.95208 * 13 2 1 31 31 H 1.09004 * 109.46810 * 53.95686 * 13 2 1 32 32 H 1.07999 * 119.97540 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.00964 * 180.02562 * 16 15 14 34 34 H 1.07992 * 119.99809 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1722 3.4641 1.3185 6 1 2.7202 3.8321 0.4637 7 6 1.9663 4.2816 2.4095 8 7 1.2985 3.8336 3.4502 9 14 2.6358 6.0255 2.4096 10 1 2.0445 6.7827 1.2772 11 1 2.2827 6.6913 3.6891 12 1 4.1131 5.9886 2.2625 13 6 1.9954 -0.7660 -1.1375 14 6 1.6368 -2.2204 -0.9727 15 6 2.4942 -3.0712 -0.2999 16 6 2.1673 -4.4054 -0.1483 17 6 0.9800 -4.8904 -0.6697 18 9 0.6567 -6.1932 -0.5168 19 6 0.1210 -4.0373 -1.3435 20 17 -1.3686 -4.6430 -1.9976 21 6 0.4510 -2.7025 -1.4941 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0798 1.3443 -0.1081 26 1 1.5612 1.9273 -0.8309 27 1 0.5473 2.0845 1.4266 28 1 2.0658 1.5016 2.1492 29 1 1.1540 4.4086 4.2179 30 1 3.0797 -0.6611 -1.1756 31 1 1.5611 -0.3872 -2.0627 32 1 3.4201 -2.6930 0.1075 33 1 2.8373 -5.0693 0.3778 34 1 -0.2178 -2.0371 -2.0196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258932480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:12 Heat of formation + Delta-G solvation = -48.004542 kcal Electronic energy + Delta-G solvation = -17816.319128 eV Core-core repulsion = 14688.493529 eV Total energy + Delta-G solvation = -3127.825599 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.01290 -40.56611 -38.37724 -37.52079 -35.18992 -32.89261 -31.99172 -30.91620 -28.18096 -26.95109 -24.54569 -24.15345 -22.32009 -21.53611 -18.82129 -18.56190 -17.73046 -17.09567 -16.86153 -16.49328 -16.39427 -15.98562 -15.45901 -15.00344 -14.62297 -14.55842 -14.27476 -14.13737 -13.89014 -13.25978 -12.99258 -12.82793 -12.73477 -12.57419 -12.44357 -12.37526 -12.21207 -11.95923 -11.75286 -11.30564 -11.23702 -10.50476 -10.01983 -9.66989 -9.15411 -8.17061 -6.28123 -0.09020 0.04872 0.93738 1.42744 1.45388 1.53241 2.33125 2.44037 3.03934 3.16697 3.26323 3.61476 3.69831 4.02591 4.14643 4.30459 4.39358 4.45490 4.61018 4.63881 4.76790 4.81443 4.84865 4.90835 5.04761 5.09034 5.15027 5.44464 5.49671 5.66443 5.70492 5.81590 6.10987 6.27570 6.34938 6.89914 7.41074 8.94726 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.003296 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.158004 B = 8494.285838 C = 8713.501632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.080 3.920 4 C 0.034 3.966 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.092 3.908 14 C -0.072 4.072 15 C -0.064 4.064 16 C -0.136 4.136 17 C 0.089 3.911 18 F -0.136 7.136 19 C -0.084 4.084 20 Cl -0.057 7.057 21 C -0.079 4.079 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.024 0.976 27 H -0.007 1.007 28 H -0.008 1.008 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 -16.604 -11.606 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.047 4.047 4 C -0.003 4.003 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.190 1.190 13 C -0.035 4.035 14 C -0.073 4.073 15 C -0.083 4.083 16 C -0.155 4.155 17 C 0.069 3.931 18 F -0.115 7.115 19 C -0.111 4.111 20 Cl -0.028 7.028 21 C -0.098 4.098 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.462 -16.882 -11.073 20.195 hybrid contribution -0.574 0.974 -0.310 1.172 sum -0.111 -15.908 -11.383 19.561 Atomic orbital electron populations 1.22396 0.87700 1.01772 1.00331 1.62003 1.08200 1.14450 1.42590 1.22000 0.99148 0.86221 0.97365 1.18943 0.95005 0.93621 0.92773 1.21627 1.35267 0.99022 1.02313 0.91958 1.25943 0.95459 1.03129 0.95124 1.70106 1.42044 1.38287 1.06805 0.85519 0.79174 0.79047 0.77406 1.19220 1.21104 1.19029 1.21126 1.01701 0.88566 0.92114 1.19874 0.93964 0.95903 0.97579 1.21292 1.00421 0.91595 0.94974 1.21390 0.95378 0.97334 1.01360 1.17645 0.95640 0.78356 1.01456 1.91508 1.92784 1.33301 1.93912 1.21036 0.90742 0.94867 1.04485 1.98377 1.31909 1.87936 1.84596 1.20997 0.97009 0.92384 0.99434 0.90649 0.93241 0.95050 0.91052 0.95792 0.98849 0.98931 0.92861 0.88261 0.92843 0.82480 0.81482 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 8.94 127.69 1.14 1.97 16 2 N -0.55 -17.98 4.75 -927.07 -4.41 -22.39 16 3 C 0.08 3.13 4.90 86.31 0.42 3.56 16 4 C 0.03 1.76 4.90 29.85 0.15 1.91 16 5 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 9 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 C 0.09 2.19 5.12 85.56 0.44 2.63 16 14 C -0.07 -1.56 4.88 -19.86 -0.10 -1.66 16 15 C -0.06 -1.23 9.70 22.27 0.22 -1.02 16 16 C -0.14 -2.49 10.03 22.31 0.22 -2.26 16 17 C 0.09 1.95 7.28 22.40 0.16 2.11 16 18 F -0.14 -3.16 16.84 44.97 0.76 -2.41 16 19 C -0.08 -1.86 6.33 22.37 0.14 -1.72 16 20 Cl -0.06 -1.23 28.62 -2.72 -0.08 -1.31 16 21 C -0.08 -1.68 7.75 22.29 0.17 -1.50 16 22 H 0.07 2.11 6.17 -2.39 -0.01 2.09 16 23 H 0.05 1.88 6.30 -2.39 -0.02 1.86 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 26 H 0.02 0.92 8.12 -2.39 -0.02 0.91 16 27 H -0.01 -0.38 6.47 -2.39 -0.02 -0.40 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.10 2.12 7.87 -2.39 -0.02 2.10 16 31 H 0.05 1.17 8.06 -2.38 -0.02 1.16 16 32 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.15 2.82 8.03 -2.91 -0.02 2.80 16 Total: -1.00 -63.47 306.15 3.34 -60.13 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.10 Total: 2.16 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 3.66 Total: -25.50 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -4.12 Total: -78.63 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.41 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -63.47 3.34 -60.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258932480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.124 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds