Wall clock time and date at job start Mon Mar 30 2020 00:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 119.99933 * 2 1 4 4 H 1.08004 * 119.99953 * 142.82521 * 3 2 1 5 5 C 1.38948 * 120.00251 * 322.82461 * 3 2 1 6 6 N 1.31403 * 120.00359 * 158.40574 * 5 3 2 7 7 Si 1.86801 * 119.99942 * 338.40960 * 5 3 2 8 8 H 1.48505 * 109.47042 * 95.71418 * 7 5 3 9 9 H 1.48491 * 109.47295 * 215.71674 * 7 5 3 10 10 H 1.48503 * 109.46932 * 335.72339 * 7 5 3 11 11 C 1.34773 * 120.00250 * 179.97438 * 2 1 3 12 12 O 1.21298 * 120.00302 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99933 * 359.97438 * 11 2 1 14 14 O 1.42904 * 109.47154 * 180.02562 * 13 11 2 15 15 C 1.35999 * 116.99964 * 180.02562 * 14 13 11 16 16 C 1.38643 * 120.03658 * 0.29166 * 15 14 13 17 17 C 1.38191 * 119.99260 * 180.28195 * 16 15 14 18 18 C 1.38453 * 120.06809 * 359.42289 * 17 16 15 19 19 F 1.35095 * 119.96435 * 180.30108 * 18 17 16 20 20 C 1.38445 * 120.07363 * 0.28208 * 18 17 16 21 21 C 1.38338 * 120.00825 * 0.02562 * 20 18 17 22 22 F 1.35098 * 120.03102 * 180.02562 * 21 20 18 23 23 H 1.09000 * 109.47163 * 265.13775 * 1 2 3 24 24 H 1.09001 * 109.47619 * 25.13316 * 1 2 3 25 25 H 1.08998 * 109.47116 * 145.13724 * 1 2 3 26 26 H 0.96998 * 120.00763 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.47037 * 59.99937 * 13 11 2 28 28 H 1.08994 * 109.46966 * 300.00264 * 13 11 2 29 29 H 1.07997 * 120.00191 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.96574 * 179.70348 * 17 16 15 31 31 H 1.08003 * 119.99765 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5652 5 6 1.6675 2.2684 -0.7271 6 7 2.0432 3.4890 -0.4176 7 14 0.4840 1.9867 -2.1447 8 1 -0.9113 2.1585 -1.6662 9 1 0.7616 2.9683 -3.2238 10 1 0.6607 0.6093 -2.6708 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0017 14 8 2.3141 -3.5584 0.0027 15 6 1.7943 -4.8152 0.0032 16 6 0.4199 -4.9978 -0.0032 17 6 -0.1073 -6.2751 0.0033 18 6 0.7356 -7.3735 0.0042 19 9 0.2180 -8.6213 0.0043 20 6 2.1084 -7.1945 0.0044 21 6 2.6396 -5.9171 0.0044 22 9 3.9791 -5.7419 0.0041 23 1 -0.3633 -0.0871 1.0240 24 1 -0.3634 0.9303 -0.4365 25 1 -0.3633 -0.8432 -0.5874 26 1 1.7058 4.2437 -0.9249 27 1 0.7584 -2.5306 -0.8880 28 1 0.7591 -2.5294 0.8919 29 1 -0.2385 -4.1418 -0.0083 30 1 -1.1779 -6.4168 0.0031 31 1 2.7648 -8.0521 0.0047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259783867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:36 Heat of formation + Delta-G solvation = -111.816265 kcal Electronic energy + Delta-G solvation = -20114.381842 eV Core-core repulsion = 16419.619689 eV Total energy + Delta-G solvation = -3694.762153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.13341 -48.90309 -40.22630 -38.68465 -37.14191 -34.89490 -32.21597 -31.18340 -30.07166 -28.25158 -26.55651 -24.73713 -23.27058 -22.60066 -19.35189 -18.74083 -17.86627 -17.40037 -17.19490 -16.52914 -16.05764 -15.89606 -15.72833 -15.50162 -15.25371 -14.95847 -14.56174 -14.25256 -14.01312 -13.38243 -12.77329 -12.70285 -12.60060 -12.43546 -12.31983 -11.92265 -11.83932 -11.42055 -11.03336 -10.82648 -10.49411 -10.03038 -9.35844 -9.19612 -8.67005 -8.27680 -7.89998 -6.49875 -4.08785 0.69395 0.82386 2.81290 2.93005 3.11959 3.13565 3.16956 3.50266 3.71180 4.03853 4.12805 4.25042 4.43572 4.56710 4.74467 4.84294 5.04505 5.19616 5.26935 5.32215 5.51060 5.61319 5.66033 5.74550 5.76920 5.93757 6.11869 6.34567 7.10979 7.42641 8.13020 8.36816 8.82326 9.16770 9.57578 10.61705 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.004262 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.721734 B = 6568.833499 C = 7105.155149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.464 5.464 3 C -0.319 4.319 4 H 0.108 0.892 5 C 0.061 3.939 6 N -0.859 5.859 7 Si 0.880 3.120 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.265 1.265 11 C 0.461 3.539 12 O -0.540 6.540 13 C 0.042 3.958 14 O -0.273 6.273 15 C 0.099 3.901 16 C -0.160 4.160 17 C -0.119 4.119 18 C 0.081 3.919 19 F -0.136 7.136 20 C -0.152 4.152 21 C 0.100 3.900 22 F -0.120 7.120 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.276 0.724 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 -18.024 0.038 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.188 5.188 3 C -0.445 4.445 4 H 0.126 0.874 5 C -0.145 4.145 6 N -0.494 5.494 7 Si 0.708 3.292 8 H -0.201 1.201 9 H -0.212 1.212 10 H -0.189 1.189 11 C 0.248 3.752 12 O -0.419 6.419 13 C -0.037 4.037 14 O -0.184 6.184 15 C 0.051 3.949 16 C -0.179 4.179 17 C -0.138 4.138 18 C 0.062 3.938 19 F -0.114 7.114 20 C -0.172 4.172 21 C 0.079 3.921 22 F -0.098 7.098 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.140 -17.752 0.006 19.530 hybrid contribution -0.895 -0.105 -0.798 1.204 sum -9.035 -17.858 -0.792 20.029 Atomic orbital electron populations 1.22087 0.83179 1.01933 1.01289 1.43560 1.04093 1.05080 1.66038 1.19067 1.10617 0.84797 1.30046 0.87399 1.25368 0.97487 0.94725 0.96965 1.69732 1.43432 0.98121 1.38151 0.86924 0.80125 0.79148 0.83051 1.20114 1.21183 1.18914 1.19663 0.88322 0.83679 0.83540 1.90633 1.13345 1.86248 1.51663 1.22839 0.92157 0.86134 1.02561 1.86324 1.34395 1.10418 1.87261 1.19219 0.91946 0.85525 0.98250 1.21077 0.93051 0.98476 1.05294 1.20978 1.00733 0.90744 1.01361 1.17109 0.90819 0.79831 1.06077 1.91509 1.87049 1.38659 1.94225 1.20866 0.94750 0.96540 1.05043 1.16551 0.77603 0.90937 1.06971 1.91569 1.28455 1.95958 1.93808 0.92500 0.91127 0.92871 0.91357 0.89745 0.89771 0.83227 0.83751 0.82858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 8.78 59.84 0.53 1.57 16 2 N -0.46 -10.82 2.59 -122.19 -0.32 -11.13 16 3 C -0.32 -8.85 9.37 -14.93 -0.14 -8.99 16 4 H 0.11 3.39 7.90 -52.48 -0.41 2.98 16 5 C 0.06 1.64 5.29 -17.47 -0.09 1.55 16 6 N -0.86 -24.24 13.96 55.50 0.77 -23.47 16 7 Si 0.88 19.65 24.96 -169.99 -4.24 15.41 16 8 H -0.27 -5.58 6.69 56.52 0.38 -5.20 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 11 C 0.46 10.60 7.70 -10.99 -0.08 10.52 16 12 O -0.54 -15.05 16.36 -14.37 -0.24 -15.28 16 13 C 0.04 0.68 3.84 36.01 0.14 0.82 16 14 O -0.27 -4.90 9.53 -39.65 -0.38 -5.27 16 15 C 0.10 1.39 6.69 -39.19 -0.26 1.13 16 16 C -0.16 -1.69 9.04 -39.45 -0.36 -2.04 16 17 C -0.12 -1.09 10.02 -39.52 -0.40 -1.49 16 18 C 0.08 0.83 7.30 -39.43 -0.29 0.54 16 19 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 20 C -0.15 -1.64 10.00 -39.47 -0.39 -2.04 16 21 C 0.10 1.36 7.31 -39.31 -0.29 1.07 16 22 F -0.12 -1.88 17.11 2.25 0.04 -1.84 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.35 3.42 -51.93 -0.18 1.17 16 25 H 0.05 0.73 6.64 -51.93 -0.34 0.39 16 26 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.08 1.13 6.92 -51.93 -0.36 0.77 16 28 H 0.08 1.09 7.64 -51.93 -0.40 0.69 16 29 H 0.15 1.24 6.30 -52.49 -0.33 0.91 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -33.00 279.41 -4.20 -37.20 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -2.45 Total: -1.09 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.64 Total: 2.63 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.46 Total: -34.60 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.61 Total: -20.56 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.24 Total: 15.41 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.00 -4.20 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.619 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds