Wall clock time and date at job start Mon Mar 30 2020 00:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 119.99933 * 2 1 4 4 H 1.08004 * 119.99953 * 142.82521 * 3 2 1 5 5 C 1.38948 * 120.00251 * 322.82461 * 3 2 1 6 6 N 1.31403 * 120.00359 * 158.40574 * 5 3 2 7 7 Si 1.86801 * 119.99942 * 338.40960 * 5 3 2 8 8 H 1.48505 * 109.47042 * 95.71418 * 7 5 3 9 9 H 1.48491 * 109.47295 * 215.71674 * 7 5 3 10 10 H 1.48503 * 109.46932 * 335.72339 * 7 5 3 11 11 C 1.34773 * 120.00250 * 179.97438 * 2 1 3 12 12 O 1.21298 * 120.00302 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99933 * 359.97438 * 11 2 1 14 14 O 1.42904 * 109.47154 * 180.02562 * 13 11 2 15 15 C 1.35999 * 116.99964 * 180.02562 * 14 13 11 16 16 C 1.38643 * 120.03658 * 0.29166 * 15 14 13 17 17 C 1.38191 * 119.99260 * 180.28195 * 16 15 14 18 18 C 1.38453 * 120.06809 * 359.42289 * 17 16 15 19 19 F 1.35095 * 119.96435 * 180.30108 * 18 17 16 20 20 C 1.38445 * 120.07363 * 0.28208 * 18 17 16 21 21 C 1.38338 * 120.00825 * 0.02562 * 20 18 17 22 22 F 1.35098 * 120.03102 * 180.02562 * 21 20 18 23 23 H 1.09000 * 109.47163 * 265.13775 * 1 2 3 24 24 H 1.09001 * 109.47619 * 25.13316 * 1 2 3 25 25 H 1.08998 * 109.47116 * 145.13724 * 1 2 3 26 26 H 0.96998 * 120.00763 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.47037 * 59.99937 * 13 11 2 28 28 H 1.08994 * 109.46966 * 300.00264 * 13 11 2 29 29 H 1.07997 * 120.00191 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.96574 * 179.70348 * 17 16 15 31 31 H 1.08003 * 119.99765 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5652 5 6 1.6675 2.2684 -0.7271 6 7 2.0432 3.4890 -0.4176 7 14 0.4840 1.9867 -2.1447 8 1 -0.9113 2.1585 -1.6662 9 1 0.7616 2.9683 -3.2238 10 1 0.6607 0.6093 -2.6708 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0017 14 8 2.3141 -3.5584 0.0027 15 6 1.7943 -4.8152 0.0032 16 6 0.4199 -4.9978 -0.0032 17 6 -0.1073 -6.2751 0.0033 18 6 0.7356 -7.3735 0.0042 19 9 0.2180 -8.6213 0.0043 20 6 2.1084 -7.1945 0.0044 21 6 2.6396 -5.9171 0.0044 22 9 3.9791 -5.7419 0.0041 23 1 -0.3633 -0.0871 1.0240 24 1 -0.3634 0.9303 -0.4365 25 1 -0.3633 -0.8432 -0.5874 26 1 1.7058 4.2437 -0.9249 27 1 0.7584 -2.5306 -0.8880 28 1 0.7591 -2.5294 0.8919 29 1 -0.2385 -4.1418 -0.0083 30 1 -1.1779 -6.4168 0.0031 31 1 2.7648 -8.0521 0.0047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:35 Heat of formation + Delta-G solvation = -134.731667 kcal Electronic energy + Delta-G solvation = -20115.375528 eV Core-core repulsion = 16419.619689 eV Total energy + Delta-G solvation = -3695.755839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.97673 -49.92517 -41.38588 -40.22187 -38.22932 -36.75118 -34.21800 -32.01447 -31.15412 -29.54830 -28.06754 -26.44820 -24.23890 -23.54596 -20.99890 -19.75654 -19.11659 -18.83792 -18.42034 -17.76722 -17.55846 -17.25485 -16.80254 -16.68278 -16.30478 -16.08520 -15.57146 -15.48242 -15.43771 -14.64845 -14.56550 -14.14482 -14.04238 -13.62640 -13.39891 -13.25970 -13.11476 -12.67086 -12.34615 -12.24579 -11.98884 -11.82623 -11.08401 -10.48446 -10.17483 -9.78541 -9.22611 -8.54484 -6.20255 -0.11624 -0.04516 1.20390 1.34223 1.47438 1.65477 1.80179 2.16973 2.29327 2.75833 2.87435 2.95969 3.29846 3.53478 3.67250 3.88985 3.92568 4.06304 4.12454 4.33064 4.35083 4.62588 4.73448 4.82250 4.83489 4.95792 4.97762 5.44368 5.54175 5.97815 6.12576 6.50903 6.87051 7.19216 7.75069 8.62727 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.004262 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.721734 B = 6568.833499 C = 7105.155149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.473 5.473 3 C -0.344 4.344 4 H 0.040 0.960 5 C 0.011 3.989 6 N -0.909 5.909 7 Si 0.959 3.041 8 H -0.229 1.229 9 H -0.293 1.293 10 H -0.254 1.254 11 C 0.448 3.552 12 O -0.611 6.611 13 C 0.055 3.945 14 O -0.317 6.317 15 C 0.073 3.927 16 C -0.147 4.147 17 C -0.102 4.102 18 C 0.082 3.918 19 F -0.134 7.134 20 C -0.147 4.147 21 C 0.067 3.933 22 F -0.144 7.144 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.107 0.893 26 H 0.282 0.718 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -20.287 -1.071 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.197 5.197 3 C -0.472 4.472 4 H 0.058 0.942 5 C -0.191 4.191 6 N -0.546 5.546 7 Si 0.781 3.219 8 H -0.154 1.154 9 H -0.220 1.220 10 H -0.178 1.178 11 C 0.238 3.762 12 O -0.495 6.495 13 C -0.022 4.022 14 O -0.230 6.230 15 C 0.026 3.974 16 C -0.165 4.165 17 C -0.120 4.120 18 C 0.063 3.937 19 F -0.113 7.113 20 C -0.167 4.167 21 C 0.047 3.953 22 F -0.123 7.123 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.125 0.875 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.200 0.800 30 H 0.200 0.800 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.983 -20.037 -1.075 23.900 hybrid contribution 0.641 0.505 -0.360 0.892 sum -12.342 -19.531 -1.436 23.149 Atomic orbital electron populations 1.22442 0.79064 1.03600 1.04275 1.43689 1.06547 1.03720 1.65703 1.18650 1.09810 0.87751 1.30981 0.94236 1.26272 1.00000 0.93608 0.99266 1.69862 1.45755 0.99421 1.39595 0.85711 0.79374 0.79109 0.77729 1.15375 1.22006 1.17761 1.20879 0.88028 0.85993 0.81339 1.90591 1.16836 1.87704 1.54347 1.22744 0.90901 0.82144 1.06459 1.86245 1.36183 1.12066 1.88496 1.19494 0.93671 0.83820 1.00384 1.21407 0.91420 1.00165 1.03513 1.21374 1.02388 0.89533 0.98728 1.17261 0.90636 0.80340 1.05483 1.91524 1.86891 1.38717 1.94143 1.20988 0.95658 0.95884 1.04132 1.16975 0.76833 0.92258 1.09233 1.91499 1.30306 1.96184 1.94310 0.89610 0.92243 0.87509 0.90786 0.85554 0.85451 0.79976 0.80017 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.47 8.78 127.77 1.12 2.59 16 2 N -0.47 -21.82 2.59 -658.89 -1.70 -23.53 16 3 C -0.34 -20.07 9.37 84.04 0.79 -19.28 16 4 H 0.04 2.75 7.90 -2.91 -0.02 2.73 16 5 C 0.01 0.61 5.29 84.93 0.45 1.06 16 6 N -0.91 -53.35 13.96 21.66 0.30 -53.05 16 7 Si 0.96 39.36 24.96 68.60 1.71 41.08 16 8 H -0.23 -7.81 6.69 99.48 0.67 -7.14 16 9 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 11 C 0.45 20.62 7.70 87.66 0.68 21.30 16 12 O -0.61 -36.10 16.36 15.95 0.26 -35.83 16 13 C 0.05 1.61 3.84 71.24 0.27 1.89 16 14 O -0.32 -11.09 9.53 -74.51 -0.71 -11.80 16 15 C 0.07 1.91 6.69 22.52 0.15 2.06 16 16 C -0.15 -2.36 9.04 22.36 0.20 -2.16 16 17 C -0.10 -1.32 10.02 22.31 0.22 -1.10 16 18 C 0.08 1.39 7.30 22.37 0.16 1.55 16 19 F -0.13 -2.28 17.26 44.97 0.78 -1.50 16 20 C -0.15 -2.92 10.00 22.34 0.22 -2.70 16 21 C 0.07 1.80 7.31 22.45 0.16 1.96 16 22 F -0.14 -4.77 17.11 44.97 0.77 -4.00 16 23 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 1.99 3.42 -2.39 -0.01 1.98 16 25 H 0.11 2.17 6.64 -2.39 -0.02 2.15 16 26 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.13 2.62 6.92 -2.39 -0.02 2.61 16 28 H 0.13 2.62 7.64 -2.39 -0.02 2.60 16 29 H 0.18 1.67 6.30 -2.91 -0.02 1.65 16 30 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 31 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -82.53 279.41 6.99 -75.55 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.14 Total: 5.91 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 4.43 Total: 7.17 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.40 Total: -76.58 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.45 Total: -47.63 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 1.55 Total: -5.50 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.71 Total: 41.08 kcal Total: -82.53 6.99 -75.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.184 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds